J4_4V6Q_011

3D structure

PDB id

4V6Q (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structural characterization of mRNA-tRNA translocation intermediates (class 5 of the six classes)

Experimental method

ELECTRON MICROSCOPY

Resolution

11.5 Å

Loop

Sequence

UCC*GGGUGAG*CU*AAUCGUA

Length

19 nucleotides

Bulged bases

4V6Q|1|BB|U|1340, 4V6Q|1|BB|G|1341

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

4V6Q|1|BB|U|1313
4V6Q|1|BB|C|1314
4V6Q|1|BB|C|1315
*
4V6Q|1|BB|G|1337
4V6Q|1|BB|G|1338
4V6Q|1|BB|G|1339
4V6Q|1|BB|U|1340
4V6Q|1|BB|G|1341
4V6Q|1|BB|A|1342
4V6Q|1|BB|G|1343
*
4V6Q|1|BB|C|1404
4V6Q|1|BB|U|1405
*
4V6Q|1|BB|A|1597
4V6Q|1|BB|A|1598
4V6Q|1|BB|U|1599
4V6Q|1|BB|C|1600
4V6Q|1|BB|G|1601
4V6Q|1|BB|U|1602
4V6Q|1|BB|A|1603

Current chains

Chain BB

23S ribomosomal RNA

Nearby chains

Chain B0

50S ribosomal protein L29

Chain BV

50S ribosomal protein L23