J4_4V6R_012

3D structure

PDB id

4V6R (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structural characterization of mRNA-tRNA translocation intermediates (class 6 of the six classes)

Experimental method

ELECTRON MICROSCOPY

Resolution

11.5 Å

Loop

Sequence

CAACUG*CACAG*UGACG*CGUAAUG

Length

23 nucleotides

Bulged bases

None detected

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

4V6R|1|BB|C|1771
4V6R|1|BB|A|1772
4V6R|1|BB|A|1773
4V6R|1|BB|C|1774
4V6R|1|BB|U|1775
4V6R|1|BB|G|1776
*
4V6R|1|BB|C|1788
4V6R|1|BB|A|1789
4V6R|1|BB|C|1790
4V6R|1|BB|A|1791
4V6R|1|BB|G|1792
*
4V6R|1|BB|U|1827
4V6R|1|BB|G|1828
4V6R|1|BB|A|1829
4V6R|1|BB|C|1830
4V6R|1|BB|G|1831
*
4V6R|1|BB|C|1974
4V6R|1|BB|G|1975
4V6R|1|BB|U|1976
4V6R|1|BB|A|1977
4V6R|1|BB|A|1978
4V6R|1|BB|U|1979
4V6R|1|BB|G|1980

Current chains

Chain BB

23S ribomosomal RNA

Nearby chains

Chain AA

Small subunit ribosomal RNA; SSU rRNA

Chain BD

50S ribosomal protein L2