3D structure

PDB id
4V6R (explore in PDB, NAKB, or RNA 3D Hub)
Description
Structural characterization of mRNA-tRNA translocation intermediates (class 6 of the six classes)
Experimental method
ELECTRON MICROSCOPY
Resolution
11.5 Å

Loop

Sequence
CU(2MG)*CG*CCUAAGGUAG*CGAAUG
Length
21 nucleotides
Bulged bases
4V6R|1|BB|U|1971
QA status
Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
J4_4V6R_013 not in the Motif Atlas
Homologous match to J4_9DFE_008
Geometric discrepancy: 0.2988
The information below is about J4_9DFE_008
Detailed Annotation
No text annotation
Broad Annotation
No text annotation
Motif group
J4_42306.1
Basepair signature
cWW-tSS-cSS-cWH-cWW-tWH-tHS-cWW-cWW-tWW-F-cSH-F-F
Number of instances in this motif group
5

Unit IDs

4V6R|1|BB|C|1833
4V6R|1|BB|U|1834
4V6R|1|BB|2MG|1835
*
4V6R|1|BB|C|1905
4V6R|1|BB|G|1906
*
4V6R|1|BB|C|1924
4V6R|1|BB|C|1925
4V6R|1|BB|U|1926
4V6R|1|BB|A|1927
4V6R|1|BB|A|1928
4V6R|1|BB|G|1929
4V6R|1|BB|G|1930
4V6R|1|BB|U|1931
4V6R|1|BB|A|1932
4V6R|1|BB|G|1933
*
4V6R|1|BB|C|1967
4V6R|1|BB|G|1968
4V6R|1|BB|A|1969
4V6R|1|BB|A|1970
4V6R|1|BB|U|1971
4V6R|1|BB|G|1972

Current chains

Chain BB
23S ribomosomal RNA

Nearby chains

Chain AA
Small subunit ribosomal RNA; SSU rRNA
Chain AD
Transfer RNA; tRNA
Chain BD
50S ribosomal protein L2

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