J4_4V6S_001

3D structure

PDB id

4V6S (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structural characterization of mRNA-tRNA translocation intermediates (class 3 of the six classes)

Experimental method

ELECTRON MICROSCOPY

Resolution

13.1 Å

Loop

Sequence

CC*GAGUAG*UGAAUAUGGG*UCCAAG

Length

24 nucleotides

Bulged bases

4V6S|1|AB|U|405

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

4V6S|1|AB|C|268
4V6S|1|AB|C|269
*
4V6S|1|AB|G|370
4V6S|1|AB|A|371
4V6S|1|AB|G|372
4V6S|1|AB|U|373
4V6S|1|AB|A|374
4V6S|1|AB|G|375
*
4V6S|1|AB|U|399
4V6S|1|AB|G|400
4V6S|1|AB|A|401
4V6S|1|AB|A|402
4V6S|1|AB|U|403
4V6S|1|AB|A|404
4V6S|1|AB|U|405
4V6S|1|AB|G|406
4V6S|1|AB|G|407
4V6S|1|AB|G|408
*
4V6S|1|AB|U|419
4V6S|1|AB|C|420
4V6S|1|AB|C|421
4V6S|1|AB|A|422
4V6S|1|AB|A|423
4V6S|1|AB|G|424

Current chains

Chain AB

23S ribomosomal RNA

Nearby chains

Chain AI

50S ribosomal protein L9

Chain AZ

50S ribosomal protein L28