J4_4V6S_002

3D structure

PDB id

4V6S (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structural characterization of mRNA-tRNA translocation intermediates (class 3 of the six classes)

Experimental method

ELECTRON MICROSCOPY

Resolution

13.1 Å

Loop

Sequence

GGAAGC*GCGCG*CAG*CGUAC

Length

19 nucleotides

Bulged bases

None detected

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

4V6S|1|AB|G|297
4V6S|1|AB|G|298
4V6S|1|AB|A|299
4V6S|1|AB|A|300
4V6S|1|AB|G|301
4V6S|1|AB|C|302
*
4V6S|1|AB|G|315
4V6S|1|AB|C|316
4V6S|1|AB|G|317
4V6S|1|AB|C|318
4V6S|1|AB|G|319
*
4V6S|1|AB|C|323
4V6S|1|AB|A|324
4V6S|1|AB|G|325
*
4V6S|1|AB|C|337
4V6S|1|AB|G|338
4V6S|1|AB|U|339
4V6S|1|AB|A|340
4V6S|1|AB|C|341

Current chains

Chain AB

23S ribomosomal RNA

Nearby chains

Chain AF

50S ribosomal protein L4

Chain AW

50S ribosomal protein L24