J4_4V6S_013

3D structure

PDB id

4V6S (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structural characterization of mRNA-tRNA translocation intermediates (class 3 of the six classes)

Experimental method

ELECTRON MICROSCOPY

Resolution

13.1 Å

Loop

Sequence

GAG*CAUAACG*CCAAAG*UGC

Length

19 nucleotides

Bulged bases

4V6S|1|BA|C|183

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

4V6S|1|BA|G|142
4V6S|1|BA|A|143
4V6S|1|BA|G|144
*
4V6S|1|BA|C|178
4V6S|1|BA|A|179
4V6S|1|BA|U|180
4V6S|1|BA|A|181
4V6S|1|BA|A|182
4V6S|1|BA|C|183
4V6S|1|BA|G|184
*
4V6S|1|BA|C|193
4V6S|1|BA|C|194
4V6S|1|BA|A|195
4V6S|1|BA|A|196
4V6S|1|BA|A|197
4V6S|1|BA|G|198
*
4V6S|1|BA|U|219
4V6S|1|BA|G|220
4V6S|1|BA|C|221

Current chains

Chain BA

16S ribosomal RNA

Nearby chains

Chain BV

30S ribosomal protein S20