J4_4V6S_015

3D structure

PDB id

4V6S (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structural characterization of mRNA-tRNA translocation intermediates (class 3 of the six classes)

Experimental method

ELECTRON MICROSCOPY

Resolution

13.1 Å

Loop

Sequence

G(4SU)GG*CGU*AAGAUCG*CC

Length

16 nucleotides

Bulged bases

4V6S|1|BC|4SU|8, 4V6S|1|BC|U|48, 4V6S|1|BC|C|49

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J4_4V6S_015 not in the Motif Atlas

Homologous match to J4_3TUP_001

Geometric discrepancy: 0.2906

The information below is about J4_3TUP_001

Detailed Annotation

tRNA junction

Broad Annotation

No text annotation

Motif group

J4_95067.1

Basepair signature

cWW-F-cWW-cWW-cHS-F-cWW-cWW

Number of instances in this motif group

48

Unit IDs

4V6S|1|BC|G|7
4V6S|1|BC|4SU|8
4V6S|1|BC|G|9
4V6S|1|BC|G|10
*
4V6S|1|BC|C|26
4V6S|1|BC|G|27
4V6S|1|BC|U|28
*
4V6S|1|BC|A|44
4V6S|1|BC|A|45
4V6S|1|BC|G|46
4V6S|1|BC|A|47
4V6S|1|BC|U|48
4V6S|1|BC|C|49
4V6S|1|BC|G|50
*
4V6S|1|BC|C|66
4V6S|1|BC|C|67

Current chains

Chain BC

P site tRNA

Nearby chains

Chain AB

Large subunit ribosomal RNA; LSU rRNA

Chain AO

50S ribosomal protein L16

Chain BO

30S ribosomal protein S13