J4_4V6T_007

3D structure

PDB id

4V6T (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the bacterial ribosome complexed by tmRNA-SmpB and EF-G during translocation and MLD-loading

Experimental method

ELECTRON MICROSCOPY

Resolution

8.3 Å

Loop

Sequence

CAAG*CGAAG*CGAG*CGUUAAG

Length

20 nucleotides

Bulged bases

4V6T|1|BA|U|653, 4V6T|1|BA|A|654

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J4_4V6T_007 not in the Motif Atlas

Homologous match to J4_5J7L_020

Geometric discrepancy: 0.0805

The information below is about J4_5J7L_020

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J4_60168.1

Basepair signature

cWW-F-F-F-F-F-cWW-F-F-F-cWW-F-tSS-F-cWW

Number of instances in this motif group

2

Unit IDs

4V6T|1|BA|C|601
4V6T|1|BA|A|602
4V6T|1|BA|A|603
4V6T|1|BA|G|604
*
4V6T|1|BA|C|624
4V6T|1|BA|G|625
4V6T|1|BA|A|626
4V6T|1|BA|A|627
4V6T|1|BA|G|628
*
4V6T|1|BA|C|635
4V6T|1|BA|G|636
4V6T|1|BA|A|637
4V6T|1|BA|G|638
*
4V6T|1|BA|C|650
4V6T|1|BA|G|651
4V6T|1|BA|U|652
4V6T|1|BA|U|653
4V6T|1|BA|A|654
4V6T|1|BA|A|655
4V6T|1|BA|G|656

Current chains

Chain BA

23S ribosomal RNA

Nearby chains

Chain B3

50S ribosomal protein L35

Chain BE

50S ribosomal protein L4

Chain BL

50S ribosomal protein L15