J4_4V6T_013

3D structure

PDB id

4V6T (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the bacterial ribosome complexed by tmRNA-SmpB and EF-G during translocation and MLD-loading

Experimental method

ELECTRON MICROSCOPY

Resolution

8.3 Å

Loop

Sequence

CUG*CG*CCUAAGGUAG*CGAAUG

Length

21 nucleotides

Bulged bases

4V6T|1|BA|C|1925, 4V6T|1|BA|U|1971

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J4_4V6T_013 not in the Motif Atlas

Homologous match to J4_5J7L_026

Geometric discrepancy: 0.3833

The information below is about J4_5J7L_026

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J4_93343.1

Basepair signature

cWW-tSS-cSS-cWH-cWW-tWH-tHS-cWW-cWW-tWW-F-cSH-F-F

Number of instances in this motif group

4

Unit IDs

4V6T|1|BA|C|1833
4V6T|1|BA|U|1834
4V6T|1|BA|G|1835
*
4V6T|1|BA|C|1905
4V6T|1|BA|G|1906
*
4V6T|1|BA|C|1924
4V6T|1|BA|C|1925
4V6T|1|BA|U|1926
4V6T|1|BA|A|1927
4V6T|1|BA|A|1928
4V6T|1|BA|G|1929
4V6T|1|BA|G|1930
4V6T|1|BA|U|1931
4V6T|1|BA|A|1932
4V6T|1|BA|G|1933
*
4V6T|1|BA|C|1967
4V6T|1|BA|G|1968
4V6T|1|BA|A|1969
4V6T|1|BA|A|1970
4V6T|1|BA|U|1971
4V6T|1|BA|G|1972

Current chains

Chain BA

23S ribosomal RNA

Nearby chains

Chain AA

Small subunit ribosomal RNA; SSU rRNA

Chain AW

SsrA-binding protein

Chain BC

50S ribosomal protein L2