J4_4V6V_008

3D structure

PDB id

4V6V (explore in PDB, NAKB, or RNA 3D Hub)

Description

Tetracycline resistance protein Tet(O) bound to the ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

9.8 Å

Loop

Sequence

GGAAG*CGCG*CAG*CGUAC

Length

17 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J4_4V6V_008 not in the Motif Atlas

Homologous match to J4_5J7L_019

Geometric discrepancy: 0.1373

The information below is about J4_5J7L_019

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J4_71729.5

Basepair signature

cWW-tSH-cHH-F-F-tHS-cWW-cWW-F-F-cWW

Number of instances in this motif group

4

Unit IDs

4V6V|1|BA|G|297
4V6V|1|BA|G|298
4V6V|1|BA|A|299
4V6V|1|BA|A|300
4V6V|1|BA|G|301
*
4V6V|1|BA|C|316
4V6V|1|BA|G|317
4V6V|1|BA|C|318
4V6V|1|BA|G|319
*
4V6V|1|BA|C|323
4V6V|1|BA|A|324
4V6V|1|BA|G|325
*
4V6V|1|BA|C|337
4V6V|1|BA|G|338
4V6V|1|BA|U|339
4V6V|1|BA|A|340
4V6V|1|BA|C|341

Current chains

Chain BA

23S ribosomal RNA

Nearby chains

Chain BF

50S ribosomal protein L4

Chain BY

50S ribosomal protein L24