J4_4V6V_009

3D structure

PDB id

4V6V (explore in PDB, NAKB, or RNA 3D Hub)

Description

Tetracycline resistance protein Tet(O) bound to the ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

9.8 Å

Loop

Sequence

CAAG*CGAAG*CGAG*CGUUAAG

Length

20 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J4_4V6V_009 not in the Motif Atlas

Homologous match to J4_5J7L_020

Geometric discrepancy: 0.4023

The information below is about J4_5J7L_020

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J4_60168.1

Basepair signature

cWW-F-F-F-F-F-cWW-F-F-F-cWW-F-tSS-F-cWW

Number of instances in this motif group

2

Unit IDs

4V6V|1|BA|C|601
4V6V|1|BA|A|602
4V6V|1|BA|A|603
4V6V|1|BA|G|604
*
4V6V|1|BA|C|624
4V6V|1|BA|G|625
4V6V|1|BA|A|626
4V6V|1|BA|A|627
4V6V|1|BA|G|628
*
4V6V|1|BA|C|635
4V6V|1|BA|G|636
4V6V|1|BA|A|637
4V6V|1|BA|G|638
*
4V6V|1|BA|C|650
4V6V|1|BA|G|651
4V6V|1|BA|U|652
4V6V|1|BA|U|653
4V6V|1|BA|A|654
4V6V|1|BA|A|655
4V6V|1|BA|G|656

Current chains

Chain BA

23S ribosomal RNA

Nearby chains

Chain B8

50S ribosomal protein L35

Chain BF

50S ribosomal protein L4

Chain BP

50S ribosomal protein L15