J4_4V6V_010

3D structure

PDB id

4V6V (explore in PDB, NAKB, or RNA 3D Hub)

Description

Tetracycline resistance protein Tet(O) bound to the ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

9.8 Å

Loop

Sequence

CGAUAAAG*CUC*GCUU*AG

Length

17 nucleotides

Bulged bases

4V6V|1|BA|G|1271, 4V6V|1|BA|A|1272, 4V6V|1|BA|U|1273, 4V6V|1|BA|U|1647

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

4V6V|1|BA|C|1270
4V6V|1|BA|G|1271
4V6V|1|BA|A|1272
4V6V|1|BA|U|1273
4V6V|1|BA|A|1274
4V6V|1|BA|A|1275
4V6V|1|BA|A|1276
4V6V|1|BA|G|1277
*
4V6V|1|BA|C|1293
4V6V|1|BA|U|1294
4V6V|1|BA|C|1295
*
4V6V|1|BA|G|1645
4V6V|1|BA|C|1646
4V6V|1|BA|U|1647
4V6V|1|BA|U|1648
*
4V6V|1|BA|A|2009
4V6V|1|BA|G|2010

Current chains

Chain BA

23S ribosomal RNA

Nearby chains

Chain B5

50S ribosomal protein L32

Chain BR

50S ribosomal protein L17

Chain BW

50S ribosomal protein L22