J4_4V6V_015

3D structure

PDB id

4V6V (explore in PDB, NAKB, or RNA 3D Hub)

Description

Tetracycline resistance protein Tet(O) bound to the ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

9.8 Å

Loop

Sequence

CU(2MG)*CG*CCUAAGGUAG*CGAAUG

Length

21 nucleotides

Bulged bases

4V6V|1|BA|U|1971

QA status

Modified nucleotides: 2MG

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J4_4V6V_015 not in the Motif Atlas

Homologous match to J4_9DFE_008

Geometric discrepancy: 0.2897

The information below is about J4_9DFE_008

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J4_93343.1

Basepair signature

cWW-tSS-cSS-cWH-cWW-tWH-tHS-cWW-cWW-tWW-F-cSH-F-F

Number of instances in this motif group

4

Unit IDs

4V6V|1|BA|C|1833
4V6V|1|BA|U|1834
4V6V|1|BA|2MG|1835
*
4V6V|1|BA|C|1905
4V6V|1|BA|G|1906
*
4V6V|1|BA|C|1924
4V6V|1|BA|C|1925
4V6V|1|BA|U|1926
4V6V|1|BA|A|1927
4V6V|1|BA|A|1928
4V6V|1|BA|G|1929
4V6V|1|BA|G|1930
4V6V|1|BA|U|1931
4V6V|1|BA|A|1932
4V6V|1|BA|G|1933
*
4V6V|1|BA|C|1967
4V6V|1|BA|G|1968
4V6V|1|BA|A|1969
4V6V|1|BA|A|1970
4V6V|1|BA|U|1971
4V6V|1|BA|G|1972

Current chains

Chain BA

23S ribosomal RNA

Nearby chains

Chain A3

Transfer RNA; tRNA

Chain AA

Small subunit ribosomal RNA; SSU rRNA

Chain BD

50S ribosomal protein L2