J4_4V6X_002

3D structure

PDB id

4V6X (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the human 80S ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

5 Å

Loop

Sequence

CAAG*CCCAGCCC*GAC*GGUAG

Length

20 nucleotides

Bulged bases

4V6X|1|A5|C|216, 4V6X|1|A5|C|217, 4V6X|1|A5|A|218, 4V6X|1|A5|G|219

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

4V6X|1|A5|C|196
4V6X|1|A5|A|197
4V6X|1|A5|A|198
4V6X|1|A5|G|199
*
4V6X|1|A5|C|215
4V6X|1|A5|C|216
4V6X|1|A5|C|217
4V6X|1|A5|A|218
4V6X|1|A5|G|219
4V6X|1|A5|C|220
4V6X|1|A5|C|221
4V6X|1|A5|C|222
*
4V6X|1|A5|G|226
4V6X|1|A5|A|227
4V6X|1|A5|C|228
*
4V6X|1|A5|G|240
4V6X|1|A5|G|241
4V6X|1|A5|U|242
4V6X|1|A5|A|243
4V6X|1|A5|G|244

Current chains

Chain A5

28S ribosomal RNA

Nearby chains

Chain CC

60S ribosomal protein L4

Chain CY

60S ribosomal protein L26