J4_4V6X_003

3D structure

PDB id

4V6X (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the human 80S ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

5 Å

Loop

Sequence

UCUC*GCCGG*CACGCGCGC*GGCGGAGCGA

Length

28 nucleotides

Bulged bases

4V6X|1|A5|G|1273

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

4V6X|1|A5|U|980
4V6X|1|A5|C|981
4V6X|1|A5|U|982
4V6X|1|A5|C|983
*
4V6X|1|A5|G|1070
4V6X|1|A5|C|1071
4V6X|1|A5|C|1072
4V6X|1|A5|G|1073
4V6X|1|A5|G|1074
*
4V6X|1|A5|C|1237
4V6X|1|A5|A|1238
4V6X|1|A5|C|1239
4V6X|1|A5|G|1240
4V6X|1|A5|C|1241
4V6X|1|A5|G|1242
4V6X|1|A5|C|1243
4V6X|1|A5|G|1244
4V6X|1|A5|C|1245
*
4V6X|1|A5|G|1265
4V6X|1|A5|G|1266
4V6X|1|A5|C|1267
4V6X|1|A5|G|1268
4V6X|1|A5|G|1269
4V6X|1|A5|A|1270
4V6X|1|A5|G|1271
4V6X|1|A5|C|1272
4V6X|1|A5|G|1273
4V6X|1|A5|A|1274

Current chains

Chain A5

28S ribosomal RNA

Nearby chains

Chain CC

60S ribosomal protein L4

Chain CE

60S ribosomal protein L6

Chain CF

60S ribosomal protein L7