J4_4V6X_006

3D structure

PDB id

4V6X (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the human 80S ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

5 Å

Loop

Sequence

GAGAUG*CAGUG*CGACC*GAGGGUGUAAAU

Length

28 nucleotides

Bulged bases

None detected

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

4V6X|1|A5|G|2550
4V6X|1|A5|A|2551
4V6X|1|A5|G|2552
4V6X|1|A5|A|2553
4V6X|1|A5|U|2554
4V6X|1|A5|G|2555
*
4V6X|1|A5|C|2572
4V6X|1|A5|A|2573
4V6X|1|A5|G|2574
4V6X|1|A5|U|2575
4V6X|1|A5|G|2576
*
4V6X|1|A5|C|2585
4V6X|1|A5|G|2586
4V6X|1|A5|A|2587
4V6X|1|A5|C|2588
4V6X|1|A5|C|2589
*
4V6X|1|A5|G|2756
4V6X|1|A5|A|2757
4V6X|1|A5|G|2758
4V6X|1|A5|G|2759
4V6X|1|A5|G|2760
4V6X|1|A5|U|2761
4V6X|1|A5|G|2762
4V6X|1|A5|U|2763
4V6X|1|A5|A|2764
4V6X|1|A5|A|2765
4V6X|1|A5|A|2766
4V6X|1|A5|U|2767

Current chains

Chain A5

28S ribosomal RNA

Nearby chains

Chain CZ

60S ribosomal protein L27

Chain Cg

60S ribosomal protein L34