J4_4V6X_009

3D structure

PDB id

4V6X (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the human 80S ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

5 Å

Loop

Sequence

CUG*CG*CUUAAGGUAG*UGAAUG

Length

21 nucleotides

Bulged bases

4V6X|1|A5|U|3818

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J4_4V6X_009 not in the Motif Atlas

Homologous match to J4_8C3A_007

Geometric discrepancy: 0.2661

The information below is about J4_8C3A_007

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

4V6X|1|A5|C|3696
4V6X|1|A5|U|3697
4V6X|1|A5|G|3698
*
4V6X|1|A5|C|3752
4V6X|1|A5|G|3753
*
4V6X|1|A5|C|3771
4V6X|1|A5|U|3772
4V6X|1|A5|U|3773
4V6X|1|A5|A|3774
4V6X|1|A5|A|3775
4V6X|1|A5|G|3776
4V6X|1|A5|G|3777
4V6X|1|A5|U|3778
4V6X|1|A5|A|3779
4V6X|1|A5|G|3780
*
4V6X|1|A5|U|3814
4V6X|1|A5|G|3815
4V6X|1|A5|A|3816
4V6X|1|A5|A|3817
4V6X|1|A5|U|3818
4V6X|1|A5|G|3819

Current chains

Chain A5

28S ribosomal RNA

Nearby chains

Chain B2

Small subunit ribosomal RNA; SSU rRNA

Chain CA

60S ribosomal protein L8

Chain Cn

60S ribosomal protein L41