J4_4V6X_010

3D structure

PDB id

4V6X (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the human 80S ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

5 Å

Loop

Sequence

CUAAGG*CUUGAU*ACC*GGG

Length

18 nucleotides

Bulged bases

4V6X|1|A5|A|4234

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

4V6X|1|A5|C|4231
4V6X|1|A5|U|4232
4V6X|1|A5|A|4233
4V6X|1|A5|A|4234
4V6X|1|A5|G|4235
4V6X|1|A5|G|4236
*
4V6X|1|A5|C|4288
4V6X|1|A5|U|4289
4V6X|1|A5|U|4290
4V6X|1|A5|G|4291
4V6X|1|A5|A|4292
4V6X|1|A5|U|4293
*
4V6X|1|A5|A|4317
4V6X|1|A5|C|4318
4V6X|1|A5|C|4319
*
4V6X|1|A5|G|4328
4V6X|1|A5|G|4329
4V6X|1|A5|G|4330

Current chains

Chain A5

28S ribosomal RNA

Nearby chains

Chain CD

60S ribosomal protein L5

Chain CT

60S ribosomal protein L21

Chain Cb

60S ribosomal protein L29

Chain Co

60S ribosomal protein L36a