J4_4V6Y_001

3D structure

PDB id

4V6Y (explore in PDB, NAKB, or RNA 3D Hub)

Description

E. coli 70S-fMetVal-tRNAVal-tRNAfMet complex in classic pre-translocation state (pre1a)

Experimental method

ELECTRON MICROSCOPY

Resolution

12 Å

Loop

Sequence

(4SU)UAG*CAC*GGG(7MG)UCG*CA

Length

16 nucleotides

Bulged bases

4V6Y|1|A1|U|8, 4V6Y|1|A1|U|47, 4V6Y|1|A1|C|48

QA status

Modified nucleotides: 4SU, 7MG

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J4_4V6Y_001 not in the Motif Atlas

Homologous match to J4_6UFG_001

Geometric discrepancy: 0.235

The information below is about J4_6UFG_001

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J4_70449.29

Basepair signature

cWW-F-cWW-cWW-cHS-F-cWW-cWW

Number of instances in this motif group

54

Unit IDs

4V6Y|1|A1|4SU|7
4V6Y|1|A1|U|8
4V6Y|1|A1|A|9
4V6Y|1|A1|G|10
*
4V6Y|1|A1|C|25
4V6Y|1|A1|A|26
4V6Y|1|A1|C|27
*
4V6Y|1|A1|G|43
4V6Y|1|A1|G|44
4V6Y|1|A1|G|45
4V6Y|1|A1|7MG|46
4V6Y|1|A1|U|47
4V6Y|1|A1|C|48
4V6Y|1|A1|G|49
*
4V6Y|1|A1|C|65
4V6Y|1|A1|A|66

Current chains

Chain A1

fMet-Val-tRNA-Val

Nearby chains

Chain BA

Large subunit ribosomal RNA; LSU rRNA