J4_4V6Y_008

3D structure

PDB id

4V6Y (explore in PDB, NAKB, or RNA 3D Hub)

Description

E. coli 70S-fMetVal-tRNAVal-tRNAfMet complex in classic pre-translocation state (pre1a)

Experimental method

ELECTRON MICROSCOPY

Resolution

12 Å

Loop

Sequence

CAAG*CGAAG*CGAG*CGUUAAG

Length

20 nucleotides

Bulged bases

4V6Y|1|BA|U|653, 4V6Y|1|BA|A|654

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J4_4V6Y_008 not in the Motif Atlas

Homologous match to J4_5J7L_020

Geometric discrepancy: 0.3612

The information below is about J4_5J7L_020

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J4_60168.1

Basepair signature

cWW-F-F-F-F-F-cWW-F-F-F-cWW-F-tSS-F-cWW

Number of instances in this motif group

2

Unit IDs

4V6Y|1|BA|C|601
4V6Y|1|BA|A|602
4V6Y|1|BA|A|603
4V6Y|1|BA|G|604
*
4V6Y|1|BA|C|624
4V6Y|1|BA|G|625
4V6Y|1|BA|A|626
4V6Y|1|BA|A|627
4V6Y|1|BA|G|628
*
4V6Y|1|BA|C|635
4V6Y|1|BA|G|636
4V6Y|1|BA|A|637
4V6Y|1|BA|G|638
*
4V6Y|1|BA|C|650
4V6Y|1|BA|G|651
4V6Y|1|BA|U|652
4V6Y|1|BA|U|653
4V6Y|1|BA|A|654
4V6Y|1|BA|A|655
4V6Y|1|BA|G|656

Current chains

Chain BA

23S ribosomal RNA

Nearby chains

Chain B3

50S ribosomal protein L33

Chain BE

50S ribosomal protein L2

Chain BL

50S ribosomal protein L13