J4_4V6Y_013

3D structure

PDB id

4V6Y (explore in PDB, NAKB, or RNA 3D Hub)

Description

E. coli 70S-fMetVal-tRNAVal-tRNAfMet complex in classic pre-translocation state (pre1a)

Experimental method

ELECTRON MICROSCOPY

Resolution

12 Å

Loop

Sequence

CUG*CG*CCUAAGGUAG*CGAAUG

Length

21 nucleotides

Bulged bases

4V6Y|1|BA|U|1971

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J4_4V6Y_013 not in the Motif Atlas

Homologous match to J4_5J7L_026

Geometric discrepancy: 0.2516

The information below is about J4_5J7L_026

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J4_93343.1

Basepair signature

cWW-tSS-cSS-cWH-cWW-tWH-tHS-cWW-cWW-tWW-F-cSH-F-F

Number of instances in this motif group

4

Unit IDs

4V6Y|1|BA|C|1833
4V6Y|1|BA|U|1834
4V6Y|1|BA|G|1835
*
4V6Y|1|BA|C|1905
4V6Y|1|BA|G|1906
*
4V6Y|1|BA|C|1924
4V6Y|1|BA|C|1925
4V6Y|1|BA|U|1926
4V6Y|1|BA|A|1927
4V6Y|1|BA|A|1928
4V6Y|1|BA|G|1929
4V6Y|1|BA|G|1930
4V6Y|1|BA|U|1931
4V6Y|1|BA|A|1932
4V6Y|1|BA|G|1933
*
4V6Y|1|BA|C|1967
4V6Y|1|BA|G|1968
4V6Y|1|BA|A|1969
4V6Y|1|BA|A|1970
4V6Y|1|BA|U|1971
4V6Y|1|BA|G|1972

Current chains

Chain BA

23S ribosomal RNA

Nearby chains

Chain A3

Transfer RNA; tRNA

Chain AA

Small subunit ribosomal RNA; SSU rRNA

Chain BC

50S ribosomal protein L35