J4_4V6Z_002

3D structure

PDB id

4V6Z (explore in PDB, NAKB, or RNA 3D Hub)

Description

E. coli 70S-fMetVal-tRNAVal-tRNAfMet complex in classic pre-translocation state (pre1b)

Experimental method

ELECTRON MICROSCOPY

Resolution

12 Å

Loop

Sequence

G(4SU)GG*CGUC*GAAGGUCG*CC

Length

18 nucleotides

Bulged bases

4V6Z|1|A3|4SU|8, 4V6Z|1|A3|U|48, 4V6Z|1|A3|C|49

QA status

Modified nucleotides: 4SU

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

4V6Z|1|A3|G|7
4V6Z|1|A3|4SU|8
4V6Z|1|A3|G|9
4V6Z|1|A3|G|10
*
4V6Z|1|A3|C|26
4V6Z|1|A3|G|27
4V6Z|1|A3|U|28
4V6Z|1|A3|C|29
*
4V6Z|1|A3|G|43
4V6Z|1|A3|A|44
4V6Z|1|A3|A|45
4V6Z|1|A3|G|46
4V6Z|1|A3|G|47
4V6Z|1|A3|U|48
4V6Z|1|A3|C|49
4V6Z|1|A3|G|50
*
4V6Z|1|A3|C|66
4V6Z|1|A3|C|67

Current chains

Chain A3

tRNA-fMet

Nearby chains

Chain A1

Transfer RNA; tRNA

Chain AA

Small subunit ribosomal RNA; SSU rRNA

Chain AM

30S ribosomal protein S13

Chain BA

Large subunit ribosomal RNA; LSU rRNA

Chain BM

50S ribosomal protein L16