J4_4V71_001

3D structure

PDB id

4V71 (explore in PDB, NAKB, or RNA 3D Hub)

Description

E. coli 70S-fMetVal-tRNAVal-tRNAfMet complex in intermediate pre-translocation state (pre2)

Experimental method

ELECTRON MICROSCOPY

Resolution

20 Å

Loop

Sequence

(4SU)UAG*CAC*GGG(7MG)UCG*CA

Length

16 nucleotides

Bulged bases

4V71|1|A1|U|8, 4V71|1|A1|U|47, 4V71|1|A1|C|48

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J4_4V71_001 not in the Motif Atlas

Homologous match to J4_3KFU_002

Geometric discrepancy: 0.3094

The information below is about J4_3KFU_002

Detailed Annotation

tRNA junction

Broad Annotation

No text annotation

Motif group

J4_95067.1

Basepair signature

cWW-F-cWW-cWW-cHS-F-cWW-cWW

Number of instances in this motif group

48

Unit IDs

4V71|1|A1|4SU|7
4V71|1|A1|U|8
4V71|1|A1|A|9
4V71|1|A1|G|10
*
4V71|1|A1|C|25
4V71|1|A1|A|26
4V71|1|A1|C|27
*
4V71|1|A1|G|43
4V71|1|A1|G|44
4V71|1|A1|G|45
4V71|1|A1|7MG|46
4V71|1|A1|U|47
4V71|1|A1|C|48
4V71|1|A1|G|49
*
4V71|1|A1|C|65
4V71|1|A1|A|66

Current chains

Chain A1

fMet-Val-tRNA-Val

Nearby chains

Chain BA

Large subunit ribosomal RNA; LSU rRNA