J4_4V72_014

3D structure

PDB id

4V72 (explore in PDB, NAKB, or RNA 3D Hub)

Description

E. coli 70S-fMetVal-tRNAVal-tRNAfMet complex in hybrid pre-translocation state (pre4)

Experimental method

ELECTRON MICROSCOPY

Resolution

13 Å

Loop

Sequence

CUG*CG*CCUAAGGUAG*CGAAUG

Length

21 nucleotides

Bulged bases

4V72|1|BA|U|1971

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J4_4V72_014 not in the Motif Atlas

Homologous match to J4_5J7L_026

Geometric discrepancy: 0.2377

The information below is about J4_5J7L_026

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J4_93343.1

Basepair signature

cWW-tSS-cSS-cWH-cWW-tWH-tHS-cWW-cWW-tWW-F-cSH-F-F

Number of instances in this motif group

4

Unit IDs

4V72|1|BA|C|1833
4V72|1|BA|U|1834
4V72|1|BA|G|1835
*
4V72|1|BA|C|1905
4V72|1|BA|G|1906
*
4V72|1|BA|C|1924
4V72|1|BA|C|1925
4V72|1|BA|U|1926
4V72|1|BA|A|1927
4V72|1|BA|A|1928
4V72|1|BA|G|1929
4V72|1|BA|G|1930
4V72|1|BA|U|1931
4V72|1|BA|A|1932
4V72|1|BA|G|1933
*
4V72|1|BA|C|1967
4V72|1|BA|G|1968
4V72|1|BA|A|1969
4V72|1|BA|A|1970
4V72|1|BA|U|1971
4V72|1|BA|G|1972

Current chains

Chain BA

23S ribosomal RNA

Nearby chains

Chain AA

Small subunit ribosomal RNA; SSU rRNA

Chain BC

50S ribosomal protein L2