J4_4V73_002

3D structure

PDB id

4V73 (explore in PDB, NAKB, or RNA 3D Hub)

Description

E. coli 70S-fMetVal-tRNAVal-tRNAfMet complex in hybrid pre-translocation state (pre5a)

Experimental method

ELECTRON MICROSCOPY

Resolution

15 Å

Loop

Sequence

G(4SU)GG*CGU*AAGGUCG*CC

Length

16 nucleotides

Bulged bases

4V73|1|A3|4SU|8, 4V73|1|A3|U|48, 4V73|1|A3|C|49

QA status

Modified nucleotides: 4SU

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J4_4V73_002 not in the Motif Atlas

Homologous match to J4_7YSE_001

Geometric discrepancy: 0.2437

The information below is about J4_7YSE_001

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J4_70449.28

Basepair signature

cWW-F-cWW-cWW-cHS-F-cWW-cWW

Number of instances in this motif group

55

Unit IDs

4V73|1|A3|G|7
4V73|1|A3|4SU|8
4V73|1|A3|G|9
4V73|1|A3|G|10
*
4V73|1|A3|C|26
4V73|1|A3|G|27
4V73|1|A3|U|28
*
4V73|1|A3|A|44
4V73|1|A3|A|45
4V73|1|A3|G|46
4V73|1|A3|G|47
4V73|1|A3|U|48
4V73|1|A3|C|49
4V73|1|A3|G|50
*
4V73|1|A3|C|66
4V73|1|A3|C|67

Current chains

Chain A3

tRNA-fMet

Nearby chains

Chain AA

Small subunit ribosomal RNA; SSU rRNA

Chain AM

30S ribosomal protein S13

Chain B1

50S ribosomal protein L33