3D structure

PDB id
4V74 (explore in PDB, NAKB, or RNA 3D Hub)
Description
70S-fMetVal-tRNAVal-tRNAfMet complex in hybrid pre-translocation state (pre5b)
Experimental method
ELECTRON MICROSCOPY
Resolution
17 Å

Loop

Sequence
(4SU)UAG*CAC*GGG(7MG)UCG*CA
Length
16 nucleotides
Bulged bases
4V74|1|A1|U|8, 4V74|1|A1|U|47, 4V74|1|A1|C|48
QA status
Modified nucleotides: 4SU, 7MG

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
J4_4V74_001 not in the Motif Atlas
Homologous match to J4_5AXM_001
Geometric discrepancy: 0.4658
The information below is about J4_5AXM_001
Detailed Annotation
tRNA junction
Broad Annotation
No text annotation
Motif group
J4_70449.29
Basepair signature
cWW-F-cWW-cWW-cHS-F-cWW-cWW
Number of instances in this motif group
54

Unit IDs

4V74|1|A1|4SU|7
4V74|1|A1|U|8
4V74|1|A1|A|9
4V74|1|A1|G|10
*
4V74|1|A1|C|25
4V74|1|A1|A|26
4V74|1|A1|C|27
*
4V74|1|A1|G|43
4V74|1|A1|G|44
4V74|1|A1|G|45
4V74|1|A1|7MG|46
4V74|1|A1|U|47
4V74|1|A1|C|48
4V74|1|A1|G|49
*
4V74|1|A1|C|65
4V74|1|A1|A|66

Current chains

Chain A1
fMet-Val-tRNA-Val

Nearby chains

Chain BA
Large subunit ribosomal RNA; LSU rRNA
Chain BM
50S ribosomal protein L16

Coloring options:


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