4V74 Hairpin, Internal, and multi-helix Junction Loop Motifs
Valid loops
No loops found
Problematic loops
| # | loop id | Problem | Sequence |
|---|---|---|---|
| HL_4V74_001 | No text annotation | ||
| HL_4V74_002 | tRNA anticodon loop | ||
| HL_4V74_003 | T-loop with 2 stacked bulged bases | ||
| HL_4V74_004 | No text annotation | ||
| HL_4V74_005 | tRNA anticodon loop | ||
| HL_4V74_006 | T-loop with 2 stacked bulged bases | ||
| HL_4V74_007 | No text annotation | ||
| HL_4V74_008 | Mini UNCG related | ||
| HL_4V74_009 | GNRA | ||
| HL_4V74_010 | GNRA | ||
| HL_4V74_011 | No text annotation | ||
| HL_4V74_012 | GNRA related | ||
| HL_4V74_013 | No text annotation | ||
| HL_4V74_111 | No text annotation | ||
| HL_4V74_014 | No text annotation | ||
| HL_4V74_015 | No text annotation | ||
| HL_4V74_016 | GNRA | ||
| HL_4V74_017 | UNCG | ||
| HL_4V74_018 | No text annotation | ||
| HL_4V74_019 | GNRA | ||
| HL_4V74_020 | GNRA-like with tWH | ||
| HL_4V74_021 | No text annotation | ||
| HL_4V74_022 | GNRA | ||
| HL_4V74_023 | No text annotation | ||
| HL_4V74_024 | No text annotation | ||
| HL_4V74_025 | GNRA | ||
| HL_4V74_026 | GNRA | ||
| HL_4V74_027 | No text annotation | ||
| HL_4V74_028 | GNRA | ||
| HL_4V74_029 | No text annotation | ||
| HL_4V74_030 | GNRA | ||
| HL_4V74_031 | T-loop related | ||
| HL_4V74_032 | No text annotation | ||
| HL_4V74_033 | GNRA | ||
| HL_4V74_034 | GNRA | ||
| HL_4V74_035 | T-loop with 2 bulged bases not stacked | ||
| HL_4V74_036 | No text annotation | ||
| HL_4V74_037 | UNCG | ||
| HL_4V74_038 | GNRA | ||
| HL_4V74_039 | No text annotation | ||
| HL_4V74_040 | No text annotation | ||
| HL_4V74_041 | No text annotation | ||
| HL_4V74_042 | No text annotation | ||
| HL_4V74_043 | No text annotation | ||
| HL_4V74_044 | No text annotation | ||
| HL_4V74_045 | No text annotation | ||
| HL_4V74_046 | No text annotation | ||
| HL_4V74_047 | T-loop with 2 stacked bulged bases | ||
| HL_4V74_048 | No text annotation | ||
| HL_4V74_049 | T-loop with unstacked turn | ||
| HL_4V74_050 | No text annotation | ||
| HL_4V74_051 | No text annotation | ||
| HL_4V74_052 | GNRA | ||
| HL_4V74_053 | GNRA | ||
| HL_4V74_054 | No text annotation | ||
| HL_4V74_055 | T-loop with 2 stacked bulged bases | ||
| HL_4V74_056 | No text annotation | ||
| HL_4V74_057 | GNRA | ||
| HL_4V74_058 | No text annotation | ||
| HL_4V74_059 | No text annotation | ||
| HL_4V74_060 | No text annotation | ||
| HL_4V74_061 | UNCG variation | ||
| HL_4V74_062 | No text annotation | ||
| HL_4V74_063 | No text annotation | ||
| HL_4V74_064 | GNRA | ||
| HL_4V74_065 | No text annotation | ||
| HL_4V74_066 | No text annotation | ||
| HL_4V74_067 | UNCG variation | ||
| HL_4V74_068 | No text annotation | ||
| HL_4V74_069 | GNRA | ||
| HL_4V74_070 | T-loop with 2 stacked bulged bases | ||
| HL_4V74_071 | Pseudoknot geometry with 3' bulge | ||
| HL_4V74_072 | GNRA | ||
| HL_4V74_073 | No text annotation | ||
| HL_4V74_074 | No text annotation | ||
| HL_4V74_075 | Pseudoknot geometry with 3' bulge | ||
| HL_4V74_076 | No text annotation | ||
| HL_4V74_077 | No text annotation | ||
| HL_4V74_078 | No text annotation | ||
| HL_4V74_079 | GNRA | ||
| HL_4V74_080 | UNCG | ||
| HL_4V74_081 | Mini UNCG related | ||
| HL_4V74_082 | No text annotation | ||
| HL_4V74_083 | No text annotation | ||
| HL_4V74_084 | GNRA related | ||
| HL_4V74_085 | GNRA variation | ||
| HL_4V74_086 | No text annotation | ||
| HL_4V74_087 | No text annotation | ||
| HL_4V74_088 | No text annotation | ||
| HL_4V74_089 | UNCG | ||
| HL_4V74_090 | No text annotation | ||
| HL_4V74_091 | No text annotation | ||
| HL_4V74_092 | No text annotation | ||
| HL_4V74_093 | No text annotation | ||
| HL_4V74_094 | Pseudoknot geometry | ||
| HL_4V74_095 | GNRA | ||
| HL_4V74_096 | GNRA | ||
| HL_4V74_097 | No text annotation | ||
| HL_4V74_098 | No text annotation | ||
| HL_4V74_099 | GNRA variation | ||
| HL_4V74_100 | No text annotation | ||
| HL_4V74_101 | GNRA | ||
| HL_4V74_102 | GNRA | ||
| HL_4V74_103 | Ribsomal LSU H95 | ||
| HL_4V74_104 | No text annotation | ||
| HL_4V74_105 | Mini UNCG | ||
| HL_4V74_106 | No text annotation | ||
| HL_4V74_107 | GNRA | ||
| HL_4V74_110 | No text annotation | ||
| HL_4V74_108 | No text annotation | ||
| HL_4V74_109 | Mini UNCG |
Valid loops
No loops found
Problematic loops
| # | loop id | Problem | Sequence |
|---|---|---|---|
| IL_4V74_001 | Single bulged G | ||
| IL_4V74_002 | Single bulged A | ||
| IL_4V74_003 | No text annotation | ||
| IL_4V74_004 | Minor groove platform | ||
| IL_4V74_005 | Multiple bulged bases | ||
| IL_4V74_006 | Minor groove platform with extra cWW | ||
| IL_4V74_007 | Minor groove platform | ||
| IL_4V74_008 | Major groove intercalation | ||
| IL_4V74_009 | No text annotation | ||
| IL_4V74_010 | Isolated non-canonical cWW pair | ||
| IL_4V74_011 | No text annotation | ||
| IL_4V74_012 | Isolated cWH basepair | ||
| IL_4V74_013 | tWH-tWH-tHW-tHW | ||
| IL_4V74_014 | No text annotation | ||
| IL_4V74_015 | Kink-turn with non-sequential stacking | ||
| IL_4V74_016 | No text annotation | ||
| IL_4V74_017 | Single bulged U | ||
| IL_4V74_189 | C-loop | ||
| IL_4V74_018 | C-loop with extra cWW pair | ||
| IL_4V74_190 | Single bulged G | ||
| IL_4V74_178 | No text annotation | ||
| IL_4V74_019 | No text annotation | ||
| IL_4V74_020 | No text annotation | ||
| IL_4V74_021 | tSH-tHW-tWW | ||
| IL_4V74_022 | No text annotation | ||
| IL_4V74_023 | No text annotation | ||
| IL_4V74_191 | No text annotation | ||
| IL_4V74_024 | Single bulged A | ||
| IL_4V74_025 | SSU/LSU pseudoknot | ||
| IL_4V74_026 | Kink-turn related | ||
| IL_4V74_027 | No text annotation | ||
| IL_4V74_028 | tSH-tHW-tHS | ||
| IL_4V74_029 | Major groove platform | ||
| IL_4V74_030 | Major groove minor groove platform; mini C-loop | ||
| IL_4V74_031 | No text annotation | ||
| IL_4V74_032 | Isolated cWS basepair | ||
| IL_4V74_033 | Major groove platform; stack outside cWW | ||
| IL_4V74_034 | Single stack bend | ||
| IL_4V74_035 | No text annotation | ||
| IL_4V74_179 | No text annotation | ||
| IL_4V74_036 | No text annotation | ||
| IL_4V74_037 | Kink-turn | ||
| IL_4V74_038 | Left turn | ||
| IL_4V74_039 | tSH-tHW-tHS | ||
| IL_4V74_180 | Isolated non-canonical cWW pair | ||
| IL_4V74_040 | 9x7 Sarcin-Ricin with inserted C; G-bulge | ||
| IL_4V74_041 | Single bulged A | ||
| IL_4V74_042 | Single bulged G | ||
| IL_4V74_181 | Isolated near basepair | ||
| IL_4V74_043 | Minor groove platform | ||
| IL_4V74_044 | No text annotation | ||
| IL_4V74_045 | Minor groove platform | ||
| IL_4V74_046 | Single stack bend | ||
| IL_4V74_047 | Single bulged U | ||
| IL_4V74_048 | No text annotation | ||
| IL_4V74_049 | Minor groove platform | ||
| IL_4V74_050 | No text annotation | ||
| IL_4V74_051 | No text annotation | ||
| IL_4V74_052 | No text annotation | ||
| IL_4V74_053 | Minor groove platform | ||
| IL_4V74_054 | No text annotation | ||
| IL_4V74_055 | No text annotation | ||
| IL_4V74_056 | 180 degree turn | ||
| IL_4V74_057 | Double sheared with non-canonical cWW | ||
| IL_4V74_058 | No text annotation | ||
| IL_4V74_059 | No text annotation | ||
| IL_4V74_060 | No text annotation | ||
| IL_4V74_061 | No text annotation | ||
| IL_4V74_182 | Isolated non-canonical cWW pair | ||
| IL_4V74_062 | Tandem non-canonical cWW pairs | ||
| IL_4V74_063 | Double sheared | ||
| IL_4V74_064 | No text annotation | ||
| IL_4V74_065 | Single bulged A | ||
| IL_4V74_066 | No text annotation | ||
| IL_4V74_067 | Triple sheared with non-canonical cWW | ||
| IL_4V74_068 | Single bulged A | ||
| IL_4V74_069 | Minor groove platform | ||
| IL_4V74_070 | No text annotation | ||
| IL_4V74_071 | No text annotation | ||
| IL_4V74_072 | Single stack bend | ||
| IL_4V74_073 | 8x7 Sarcin-Ricin; G-bulge | ||
| IL_4V74_074 | 7x6 Sarcin-Ricin; G-bulge | ||
| IL_4V74_075 | No text annotation | ||
| IL_4V74_076 | No text annotation | ||
| IL_4V74_077 | No text annotation | ||
| IL_4V74_078 | Double sheared | ||
| IL_4V74_079 | Isolated non-canonical cWW pair | ||
| IL_4V74_080 | AAA cross-strand stack | ||
| IL_4V74_081 | Isolated non-canonical cWW pair | ||
| IL_4V74_082 | tHW-tHW cross-strand stack | ||
| IL_4V74_083 | Single bulged A | ||
| IL_4V74_084 | Single bulged G | ||
| IL_4V74_085 | Triple sheared | ||
| IL_4V74_086 | Major groove platform | ||
| IL_4V74_087 | Multiple bulged bases | ||
| IL_4V74_088 | No text annotation | ||
| IL_4V74_089 | Single stack bend | ||
| IL_4V74_090 | 7x7 Sarcin-Ricin with intercalated A; G-bulge | ||
| IL_4V74_091 | Single bulged G | ||
| IL_4V74_092 | C-loop with bulged stacked A's | ||
| IL_4V74_093 | Isolated non-canonical cWW pair | ||
| IL_4V74_094 | Double sheared with non-canonical cWW | ||
| IL_4V74_095 | Single bulged A | ||
| IL_4V74_183 | Isolated non-canonical cWW contact | ||
| IL_4V74_096 | No text annotation | ||
| IL_4V74_097 | No text annotation | ||
| IL_4V74_098 | SSU/LSU pseudoknot | ||
| IL_4V74_099 | Single bulged U | ||
| IL_4V74_100 | Kink-turn related | ||
| IL_4V74_101 | No text annotation | ||
| IL_4V74_102 | Isolated non-canonical cWW pair | ||
| IL_4V74_103 | Tandem non-canonical cWW pairs | ||
| IL_4V74_104 | Kink-turn | ||
| IL_4V74_105 | No text annotation | ||
| IL_4V74_184 | Single stack bend | ||
| IL_4V74_106 | No text annotation | ||
| IL_4V74_107 | No text annotation | ||
| IL_4V74_192 | Isolated cWS basepair | ||
| IL_4V74_108 | No text annotation | ||
| IL_4V74_109 | No text annotation | ||
| IL_4V74_110 | Kink-turn | ||
| IL_4V74_111 | 8x7 Sarcin-Ricin; G-bulge | ||
| IL_4V74_112 | Major groove platform | ||
| IL_4V74_113 | C-loop | ||
| IL_4V74_114 | UAA/GAN | ||
| IL_4V74_115 | tSH-tHW-tHS | ||
| IL_4V74_116 | No text annotation | ||
| IL_4V74_117 | UAA/GAN | ||
| IL_4V74_118 | No text annotation | ||
| IL_4V74_119 | No text annotation | ||
| IL_4V74_120 | No text annotation | ||
| IL_4V74_121 | tSH-tHW-tHS | ||
| IL_4V74_122 | No text annotation | ||
| IL_4V74_185 | 180 degree turn | ||
| IL_4V74_123 | Isolated non-canonical cWW with bulges | ||
| IL_4V74_124 | UAA/GAN variation | ||
| IL_4V74_125 | No text annotation | ||
| IL_4V74_126 | No text annotation | ||
| IL_4V74_127 | Major groove platform; stack outside cWW | ||
| IL_4V74_186 | No text annotation | ||
| IL_4V74_128 | Intercalated tWH | ||
| IL_4V74_129 | tSH-tSH-tHH-tHS | ||
| IL_4V74_130 | 6x5 Sarcin-Ricin; G-bulge | ||
| IL_4V74_131 | Triple sheared | ||
| IL_4V74_132 | Single bulged C | ||
| IL_4V74_133 | Single bulged A | ||
| IL_4V74_134 | Kink-turn related | ||
| IL_4V74_135 | Minor groove platform, major groove intercalation | ||
| IL_4V74_136 | Major groove intercalation | ||
| IL_4V74_187 | No text annotation | ||
| IL_4V74_137 | UAA/GAN related | ||
| IL_4V74_138 | Bulged stacked bases | ||
| IL_4V74_139 | No text annotation | ||
| IL_4V74_140 | Major groove platform | ||
| IL_4V74_141 | No text annotation | ||
| IL_4V74_142 | Single bulged U | ||
| IL_4V74_143 | Minor groove platform | ||
| IL_4V74_144 | Isolated tHS basepair with bulges | ||
| IL_4V74_145 | Isolated non-canonical cWW pair | ||
| IL_4V74_146 | Isolated non-canonical cWW pair | ||
| IL_4V74_147 | Isolated non-canonical cWW pair | ||
| IL_4V74_148 | Multiple bulged bases | ||
| IL_4V74_149 | No text annotation | ||
| IL_4V74_150 | No text annotation | ||
| IL_4V74_151 | Single bulged U | ||
| IL_4V74_152 | Double sheared | ||
| IL_4V74_153 | No text annotation | ||
| IL_4V74_154 | Major groove platform | ||
| IL_4V74_155 | Major groove platform | ||
| IL_4V74_156 | Major groove minor groove platform with extra cWW | ||
| IL_4V74_157 | Double sheared with non-canonical cWW | ||
| IL_4V74_158 | Major groove platform | ||
| IL_4V74_159 | Isolated non-canonical cWW with bulges | ||
| IL_4V74_160 | No text annotation | ||
| IL_4V74_161 | Major groove platform with intercalation | ||
| IL_4V74_162 | No text annotation | ||
| IL_4V74_163 | tSH-tHS-tHW | ||
| IL_4V74_164 | Sarcin-Ricin target in LSU H95; G-bulge | ||
| IL_4V74_165 | C-loop | ||
| IL_4V74_166 | UAA/GAN related, with intercalation | ||
| IL_4V74_167 | Multiple bulged bases | ||
| IL_4V74_168 | UAA/GAN with extra cWW | ||
| IL_4V74_188 | Isolated near basepair | ||
| IL_4V74_169 | No text annotation | ||
| IL_4V74_170 | Major groove intercalation | ||
| IL_4V74_171 | Multiple bulged bases with non-canonical cWW | ||
| IL_4V74_172 | No text annotation | ||
| IL_4V74_173 | Major groove intercalation | ||
| IL_4V74_174 | No text annotation | ||
| IL_4V74_175 | Major groove minor groove platform; mini C-loop | ||
| IL_4V74_176 | Symmetric double minor groove platform | ||
| IL_4V74_177 | Bacterial 5S Loop E |
Valid loops
No loops found
Problematic loops
| # | loop id | Problem | Sequence |
|---|---|---|---|
| J3_4V74_001 | No text annotation | ||
| J3_4V74_026 | No text annotation | ||
| J3_4V74_002 | No text annotation | ||
| J3_4V74_027 | No text annotation | ||
| J3_4V74_003 | No text annotation | ||
| J3_4V74_004 | No text annotation | ||
| J3_4V74_028 | No text annotation | ||
| J3_4V74_005 | No text annotation | ||
| J3_4V74_006 | No text annotation | ||
| J3_4V74_007 | No text annotation | ||
| J3_4V74_029 | No text annotation | ||
| J3_4V74_008 | No text annotation | ||
| J3_4V74_009 | No text annotation | ||
| J3_4V74_010 | No text annotation | ||
| J3_4V74_011 | No text annotation | ||
| J3_4V74_030 | No text annotation | ||
| J3_4V74_012 | No text annotation | ||
| J3_4V74_031 | No text annotation | ||
| J3_4V74_032 | No text annotation | ||
| J3_4V74_013 | No text annotation | ||
| J3_4V74_033 | No text annotation | ||
| J3_4V74_034 | No text annotation | ||
| J3_4V74_014 | No text annotation | ||
| J3_4V74_015 | No text annotation | ||
| J3_4V74_016 | No text annotation | ||
| J3_4V74_017 | No text annotation | ||
| J3_4V74_018 | No text annotation | ||
| J3_4V74_035 | No text annotation | ||
| J3_4V74_019 | No text annotation | ||
| J3_4V74_036 | No text annotation | ||
| J3_4V74_020 | No text annotation | ||
| J3_4V74_037 | Kink-turn 3-way junction | ||
| J3_4V74_038 | No text annotation | ||
| J3_4V74_021 | No text annotation | ||
| J3_4V74_022 | No text annotation | ||
| J3_4V74_023 | No text annotation | ||
| J3_4V74_024 | No text annotation | ||
| J3_4V74_025 | No text annotation | ||
| J4_4V74_001 | tRNA junction | ||
| J4_4V74_002 | tRNA junction | ||
| J4_4V74_003 | No text annotation | ||
| J4_4V74_004 | No text annotation | ||
| J4_4V74_005 | No text annotation | ||
| J4_4V74_006 | No text annotation | ||
| J4_4V74_007 | No text annotation | ||
| J4_4V74_008 | No text annotation | ||
| J4_4V74_009 | No text annotation | ||
| J4_4V74_010 | No text annotation | ||
| J4_4V74_011 | No text annotation | ||
| J4_4V74_012 | No text annotation | ||
| J4_4V74_013 | No text annotation | ||
| J4_4V74_014 | No text annotation | ||
| J4_4V74_015 | No text annotation | ||
| J5_4V74_001 | No text annotation | ||
| J5_4V74_002 | No text annotation | ||
| J5_4V74_003 | No text annotation | ||
| J5_4V74_004 | No text annotation | ||
| J5_4V74_005 | No text annotation | ||
| J5_4V74_006 | No text annotation | ||
| J5_4V74_007 | No text annotation | ||
| J5_4V74_008 | No text annotation | ||
| J5_4V74_010 | No text annotation | ||
| J5_4V74_009 | No text annotation | ||
| J6_4V74_001 | No text annotation | ||
| J6_4V74_002 | No text annotation | ||
| J7_4V74_001 | No text annotation | ||
| J7_4V74_002 | No text annotation |
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