4V74 Hairpin, Internal, and multi-helix Junction Loop Motifs
Valid loops
| 3D | Loop id | Location | Annotation; motif group | Mapped info |
|---|---|---|---|---|
| HL_4V74_001 | 1/A1/13:22 | No text annotation | homologous HL_3WFS_001 NA | |
| HL_4V74_002 | 1/A1/31:39 | tRNA anticodon loop | homologous HL_3TUP_002 HL_06059.6 | |
| HL_4V74_003 | 1/A1/53:61 | T-loop with 2 stacked bulged bases | homologous HL_5E81_207 HL_28252.8 | |
| HL_4V74_004 | 1/A3/13:23 | No text annotation | homologous HL_6PMO_003 NA | |
| HL_4V74_005 | 1/A3/32:40 | tRNA anticodon loop | homologous HL_7OSM_116 HL_06059.6 | |
| HL_4V74_006 | 1/A3/54:62 | T-loop with 2 stacked bulged bases | homologous HL_1SER_002 NA | |
| HL_4V74_007 | 1/AA/12:22 | No text annotation | homologous HL_5J7L_001 HL_89881.5 | |
| HL_4V74_008 | 1/AA/83:86 | Mini UNCG related | geometric HL_6AJK_001 HL_56334.1 | |
| HL_4V74_009 | 1/AA/158:163 | GNRA | homologous HL_4LFB_003 HL_37824.7 | |
| HL_4V74_010 | 1/AA/186:191 | GNRA | homologous HL_5J7L_004 HL_37824.7 | |
| HL_4V74_011 | 1/AA/206:213 | No text annotation | ||
| HL_4V74_012 | 1/AA/259:267 | GNRA related | homologous HL_5J7L_006 HL_84299.4 | |
| HL_4V74_111 | 1/AA/292:308 | No text annotation | ||
| HL_4V74_014 | 1/AA/320:333 | No text annotation | homologous HL_5J7L_008 HL_81205.3 | |
| HL_4V74_015 | 1/AA/342:347 | No text annotation | geometric HL_5KK5_001 HL_80709.3 | |
| HL_4V74_016 | 1/AA/379:384 | GNRA | homologous HL_5J7L_010 HL_37824.7 | |
| HL_4V74_017 | 1/AA/419:424 | UNCG | homologous HL_5J7L_011 HL_34617.5 | |
| HL_4V74_018 | 1/AA/462:470 | No text annotation | ||
| HL_4V74_019 | 1/AA/522:527 | GNRA | geometric HL_3PDR_001 HL_37824.7 | |
| HL_4V74_020 | 1/AA/617:623 | No text annotation | homologous HL_5J7L_014 HL_10453.3 | |
| HL_4V74_021 | 1/AA/689:698 | No text annotation | homologous HL_6CZR_086 NA | |
| HL_4V74_022 | 1/AA/726:731 | GNRA | homologous HL_5J7L_016 HL_37824.7 | |
| HL_4V74_023 | 1/AA/786:796 | No text annotation | homologous HL_5J7L_017 HL_75293.5 | |
| HL_4V74_024 | 1/AA/840:846 | No text annotation | geometric HL_2Y8W_001 HL_81100.2 | |
| HL_4V74_025 | 1/AA/862:867 | GNRA | homologous HL_5J7L_019 HL_37824.7 | |
| HL_4V74_026 | 1/AA/897:902 | GNRA | homologous HL_6CZR_091 NA | |
| HL_4V74_027 | 1/AA/963:972 | No text annotation | geometric HL_2Y9H_003 HL_75660.5 | |
| HL_4V74_028 | 1/AA/1012:1017 | GNRA | homologous HL_4LFB_022 HL_37824.7 | |
| HL_4V74_029 | 1/AA/1027:1034 | No text annotation | geometric HL_5J7L_151 HL_80922.2 | |
| HL_4V74_030 | 1/AA/1076:1081 | GNRA | homologous HL_5J7L_023 HL_37824.7 | |
| HL_4V74_031 | 1/AA/1089:1096 | T-loop related | homologous HL_4LFB_025 HL_77436.5 | |
| HL_4V74_032 | 1/AA/1134:1140 | No text annotation | homologous HL_5J7L_025 HL_87954.2 | |
| HL_4V74_033 | 1/AA/1165:1171 | GNRA | homologous HL_4LFB_027 HL_37824.7 | |
| HL_4V74_034 | 1/AA/1265:1270 | GNRA | homologous HL_5J7L_027 HL_37824.7 | |
| HL_4V74_035 | 1/AA/1314:1323 | T-loop with 2 bulged bases not stacked | geometric HL_4FRN_005 HL_01609.3 | |
| HL_4V74_036 | 1/AA/1356:1366 | No text annotation | homologous HL_4LFB_030 HL_06226.4 | |
| HL_4V74_037 | 1/AA/1449:1454 | UNCG | homologous HL_5J7L_030 HL_34617.5 | |
| HL_4V74_038 | 1/AA/1515:1520 | GNRA | geometric HL_4V88_207 NA | |
| HL_4V74_039 | 1/BA/59:68 | No text annotation | homologous HL_5J7L_134 HL_35677.3 | |
| HL_4V74_040 | 1/BA/87:95 | No text annotation | homologous HL_5J7L_135 HL_80241.1 | |
| HL_4V74_041 | 1/BA/123:128 | No text annotation | homologous HL_7RQB_003 NA | |
| HL_4V74_042 | 1/BA/137:142 | No text annotation | geometric HL_5TBW_006 NA | |
| HL_4V74_043 | 1/BA/158:168 | No text annotation | homologous HL_5J7L_138 HL_68257.1 | |
| HL_4V74_044 | 1/BA/194:201 | No text annotation | geometric HL_7RQB_006 NA | |
| HL_4V74_045 | 1/BA/225:230 | No text annotation | homologous HL_4WF9_007 HL_53890.2 | |
| HL_4V74_046 | 1/BA/246:252 | No text annotation | homologous HL_5J7L_141 HL_37369.2 | |
| HL_4V74_047 | 1/BA/305:312 | T-loop with 2 stacked bulged bases | homologous HL_4WF9_010 HL_01609.3 | |
| HL_4V74_048 | 1/BA/319:323 | No text annotation | homologous HL_5J7L_143 HL_75660.5 | |
| HL_4V74_049 | 1/BA/327:335 | T-loop with unstacked turn | homologous HL_5J7L_144 HL_27670.2 | |
| HL_4V74_050 | 1/BA/382:392 | No text annotation | homologous HL_5J7L_145 HL_91503.7 | |
| HL_4V74_051 | 1/BA/410:417 | No text annotation | homologous HL_7RQB_014 NA | |
| HL_4V74_052 | 1/BA/462:467 | GNRA | homologous HL_5J7L_147 HL_37824.7 | |
| HL_4V74_053 | 1/BA/487:493 | GNRA | homologous HL_5J7L_148 HL_37824.7 | |
| HL_4V74_054 | 1/BA/543:550 | No text annotation | homologous HL_7RQB_017 NA | |
| HL_4V74_055 | 1/BA/566:575 | T-loop with 2 stacked bulged bases | geometric HL_4WF9_018 HL_28252.8 | |
| HL_4V74_056 | 1/BA/611:617 | No text annotation | geometric HL_5TBW_012 NA | |
| HL_4V74_057 | 1/BA/629:634 | GNRA | homologous HL_7RQB_020 NA | |
| HL_4V74_058 | 1/BA/641:647 | No text annotation | homologous HL_7RQB_021 NA | |
| HL_4V74_059 | 1/BA/712:719 | No text annotation | ||
| HL_4V74_060 | 1/BA/744:753 | No text annotation | homologous HL_4WF9_023 HL_88205.2 | |
| HL_4V74_061 | 1/BA/779:785 | UNCG variation | geometric HL_1P6V_001 HL_53890.2 | |
| HL_4V74_062 | 1/BA/826:831 | No text annotation | homologous HL_7RQB_025 NA | |
| HL_4V74_063 | 1/BA/885:891 | No text annotation | homologous HL_5J7L_158 NA | |
| HL_4V74_064 | 1/BA/955:962 | GNRA | geometric HL_5TBW_042 NA | |
| HL_4V74_065 | 1/BA/978:985 | No text annotation | homologous HL_7A0S_027 HL_42998.2 | |
| HL_4V74_066 | 1/BA/1064:1074 | No text annotation | geometric HL_5TBW_006 NA | |
| HL_4V74_067 | 1/BA/1092:1099 | UNCG variation | geometric HL_1P6V_001 HL_53890.2 | |
| HL_4V74_068 | 1/BA/1172:1177 | No text annotation | geometric HL_5TBW_018 NA | |
| HL_4V74_069 | 1/BA/1222:1227 | GNRA | homologous HL_7RQB_032 NA | |
| HL_4V74_070 | 1/BA/1281:1289 | T-loop with 2 stacked bulged bases | homologous HL_5J7L_165 HL_28252.8 | |
| HL_4V74_071 | 1/BA/1324:1330 | Pseudoknot geometry with 3' bulge | homologous HL_5J7L_166 HL_57176.2 | |
| HL_4V74_072 | 1/BA/1363:1368 | GNRA | homologous HL_7RQB_035 NA | |
| HL_4V74_073 | 1/BA/1389:1398 | No text annotation | homologous HL_7RQB_036 NA | |
| HL_4V74_074 | 1/BA/1450:1461 | No text annotation | ||
| HL_4V74_075 | 1/BA/1492:1498 | Pseudoknot geometry with 3' bulge | homologous HL_5J7L_170 HL_57176.2 | |
| HL_4V74_076 | 1/BA/1533:1538 | No text annotation | geometric HL_8CRE_006 HL_75660.5 | |
| HL_4V74_077 | 1/BA/1565:1568 | No text annotation | homologous HL_7RQB_039 NA | |
| HL_4V74_078 | 1/BA/1612:1619 | No text annotation | homologous HL_7RQB_040 NA | |
| HL_4V74_079 | 1/BA/1630:1636 | GNRA | homologous HL_5J7L_174 HL_37824.7 | |
| HL_4V74_080 | 1/BA/1691:1696 | UNCG | homologous HL_5J7L_175 HL_34617.5 | |
| HL_4V74_081 | 1/BA/1728:1731 | Mini UNCG related | geometric HL_6AJK_001 HL_56334.1 | |
| HL_4V74_082 | 1/BA/1752:1756 | No text annotation | homologous HL_5J7L_177 HL_80709.3 | |
| HL_4V74_083 | 1/BA/1777:1787 | No text annotation | homologous HL_7RQB_045 NA | |
| HL_4V74_084 | 1/BA/1806:1811 | GNRA related | homologous HL_5J7L_179 HL_04783.2 | |
| HL_4V74_085 | 1/BA/1868:1873 | GNRA variation | homologous HL_5J7L_180 HL_37824.7 | |
| HL_4V74_086 | 1/BA/1910:1920 | No text annotation | homologous HL_9DFE_046 HL_25847.2 | |
| HL_4V74_087 | 1/BA/1949:1957 | No text annotation | homologous HL_5J7L_182 HL_20167.2 | |
| HL_4V74_088 | 1/BA/2027:2036 | No text annotation | homologous HL_5J7L_183 HL_61996.2 | |
| HL_4V74_089 | 1/BA/2143:2148 | UNCG | homologous HL_3U4M_001 HL_34617.5 | |
| HL_4V74_090 | 1/BA/2209:2215 | No text annotation | homologous HL_5J7L_185 HL_49922.4 | |
| HL_4V74_091 | 1/BA/2248:2256 | No text annotation | homologous HL_7A0S_052 HL_85367.2 | |
| HL_4V74_092 | 1/BA/2264:2276 | No text annotation | homologous HL_4WF9_050 HL_91939.2 | |
| HL_4V74_093 | 1/BA/2303:2313 | No text annotation | homologous HL_5J7L_188 NA | |
| HL_4V74_094 | 1/BA/2324:2331 | Pseudoknot geometry | homologous HL_5J7L_189 HL_93324.4 | |
| HL_4V74_095 | 1/BA/2356:2361 | GNRA | homologous HL_5J7L_190 HL_37824.7 | |
| HL_4V74_096 | 1/BA/2374:2379 | GNRA | homologous HL_4WF9_054 HL_37824.7 | |
| HL_4V74_097 | 1/BA/2404:2413 | No text annotation | homologous HL_9DFE_057 HL_53454.2 | |
| HL_4V74_098 | 1/BA/2471:2479 | No text annotation | homologous HL_5J7L_193 HL_32735.2 | |
| HL_4V74_099 | 1/BA/2528:2535 | No text annotation | homologous HL_4WF9_057 HL_31585.4 | |
| HL_4V74_100 | 1/BA/2551:2557 | No text annotation | homologous HL_7A0S_061 HL_30068.2 | |
| HL_4V74_101 | 1/BA/2594:2599 | GNRA | homologous HL_4WF9_059 HL_37824.7 | |
| HL_4V74_102 | 1/BA/2658:2663 | GNRA | homologous HL_7A0S_063 HL_37824.7 | |
| HL_4V74_103 | 1/BA/2701:2706 | Ribsomal LSU H95 | homologous HL_7A0S_064 HL_65794.5 | |
| HL_4V74_104 | 1/BA/2745:2759 | No text annotation | homologous HL_5J7L_199 HL_74055.2 | |
| HL_4V74_105 | 1/BA/2796:2800 | Mini UNCG | geometric HL_5AH5_007 HL_48778.2 | |
| HL_4V74_106 | 1/BA/2819:2827 | No text annotation | homologous HL_5J7L_201 HL_64690.6 | |
| HL_4V74_107 | 1/BA/2856:2861 | GNRA | homologous HL_5J7L_202 HL_37824.7 | |
| HL_4V74_110 | 1/BB/34:48 | No text annotation | homologous HL_9DFE_067 HL_97756.2 | |
| HL_4V74_108 | 1/BB/38:44 | No text annotation | geometric HL_5J7L_203 HL_47787.2 | |
| HL_4V74_109 | 1/BB/86:90 | Mini UNCG | homologous HL_5J7L_204 HL_48778.2 |
Problematic loops
| # | loop id | Problem | Sequence |
|---|---|---|---|
| HL_4V74_013 | No text annotation |
Valid loops
| 3D | Loop id | Location | Annotation; motif group | Mapped info |
|---|---|---|---|---|
| IL_4V74_001 | 1/AA/30:32, 1/AA/552:553 | Single bulged G | homologous IL_4LFB_001 IL_00225.13 | |
| IL_4V74_002 | 1/AA/44:45, 1/AA/396:398 | Single bulged A | homologous IL_5J7L_002 IL_31462.6 | |
| IL_4V74_003 | 1/AA/47:52, 1/AA/359:361 | No text annotation | geometric IL_5J7L_003 IL_14177.2 | |
| IL_4V74_004 | 1/AA/54:56, 1/AA/356:357 | Minor groove platform | homologous IL_4LFB_004 IL_51454.3 | |
| IL_4V74_005 | 1/AA/63:66, 1/AA/103:104 | Multiple bulged bases | homologous IL_4LFB_005 IL_82107.4 | |
| IL_4V74_006 | 1/AA/67:69, 1/AA/99:102 | Minor groove platform with extra cWW | homologous IL_5J7L_006 IL_90351.1 | |
| IL_4V74_007 | 1/AA/70:73, 1/AA/97:98 | Minor groove platform | homologous IL_5J7L_007 IL_15052.4 | |
| IL_4V74_008 | 1/AA/75:76, 1/AA/93:95 | Major groove intercalation | geometric IL_5J7L_352 IL_66635.5 | |
| IL_4V74_010 | 1/AA/128:131, 1/AA/231:233 | Isolated non-canonical cWW pair | homologous IL_5J7L_009 IL_57744.1 | |
| IL_4V74_011 | 1/AA/132:136, 1/AA/227:230 | No text annotation | homologous IL_4LFB_008 IL_64231.5 | |
| IL_4V74_012 | 1/AA/144:146, 1/AA/176:178 | Isolated cWH basepair | homologous IL_5J7L_011 IL_10167.6 | |
| IL_4V74_013 | 1/AA/147:153, 1/AA/168:175 | tWH-tWH-tHW-tHW | homologous IL_5J7L_012 IL_80604.6 | |
| IL_4V74_014 | 1/AA/203:206, 1/AA/213:214 | No text annotation | ||
| IL_4V74_015 | 1/AA/242:247, 1/AA/277:284 | Kink-turn with non-sequential stacking | homologous IL_5J7L_014 IL_46174.3 | |
| IL_4V74_016 | 1/AA/249:252, 1/AA/274:275 | No text annotation | homologous IL_5J7L_015 IL_47074.2 | |
| IL_4V74_017 | 1/AA/367:369, 1/AA/392:393 | Single bulged U | geometric IL_2PJP_001 IL_89505.4 | |
| IL_4V74_189 | 1/AA/371:375, 1/AA/389:390 | C-loop | homologous IL_5J7L_018 IL_03109.3 | |
| IL_4V74_190 | 1/AA/375:376, 1/AA/387:389 | Single bulged G | homologous IL_4LFB_016 IL_00225.13 | |
| IL_4V74_178 | 1/AA/409:416, 1/AA/427:433 | No text annotation | homologous IL_4LFB_017 IL_28026.3 | |
| IL_4V74_020 | 1/AA/440:442, 1/AA/492:497 | No text annotation | homologous IL_5J7L_021 IL_33323.1 | |
| IL_4V74_021 | 1/AA/446:450, 1/AA/483:488 | tSH-tHW-tWW | homologous IL_5J7L_022 IL_88269.4 | |
| IL_4V74_022 | 1/AA/450:455, 1/AA/477:483 | No text annotation | homologous IL_4LFB_019 IL_31561.1 | |
| IL_4V74_191 | 1/AA/458:460, 1/AA/471:474 | No text annotation | ||
| IL_4V74_024 | 1/AA/460:462, 1/AA/470:471 | Single bulged A | geometric IL_3OXE_001 IL_31462.6 | |
| IL_4V74_025 | 1/AA/504:511, 1/AA/540:541 | SSU/LSU pseudoknot | homologous IL_5J7L_024 IL_41203.4 | |
| IL_4V74_026 | 1/AA/515:521, 1/AA/528:536 | Kink-turn related | geometric IL_4V88_415 NA | |
| IL_4V74_027 | 1/AA/569:575, 1/AA/880:881 | No text annotation | homologous IL_4LFB_022 IL_38186.6 | |
| IL_4V74_028 | 1/AA/580:584, 1/AA/757:761 | tSH-tHW-tHS | homologous IL_5J7L_027 IL_17136.7 | |
| IL_4V74_029 | 1/AA/594:596, 1/AA/644:645 | Major groove platform | homologous IL_5J7L_028 IL_48076.6 | |
| IL_4V74_030 | 1/AA/597:598, 1/AA/640:643 | Major groove minor groove platform; mini C-loop | homologous IL_4LFB_025 IL_68140.4 | |
| IL_4V74_031 | 1/AA/605:612, 1/AA/628:633 | No text annotation | homologous IL_5J7L_030 IL_78349.3 | |
| IL_4V74_033 | 1/AA/654:655, 1/AA/751:754 | Major groove platform; stack outside cWW | geometric IL_6N5P_003 IL_50694.7 | |
| IL_4V74_034 | 1/AA/659:660, 1/AA/745:747 | Single stack bend | homologous IL_5J7L_032 IL_26793.1 | |
| IL_4V74_035 | 1/AA/661:666, 1/AA/740:744 | No text annotation | ||
| IL_4V74_036 | 1/AA/673:678, 1/AA/712:717 | No text annotation | homologous IL_6CZR_142 NA | |
| IL_4V74_037 | 1/AA/684:688, 1/AA/699:706 | Kink-turn | geometric IL_4V88_434 NA | |
| IL_4V74_038 | 1/AA/774:778, 1/AA/804:805 | Left turn | homologous IL_4LFB_032 IL_29346.2 | |
| IL_4V74_039 | 1/AA/779:783, 1/AA/799:803 | tSH-tHW-tHS | homologous IL_5J7L_037 IL_17136.7 | |
| IL_4V74_040 | 1/AA/887:895, 1/AA/904:910 | 9x7 Sarcin-Ricin with inserted C; G-bulge | homologous IL_6CZR_146 NA | |
| IL_4V74_041 | 1/AA/922:923, 1/AA/1393:1395 | Single bulged A | homologous IL_5J7L_039 IL_31462.6 | |
| IL_4V74_042 | 1/AA/925:927, 1/AA/1390:1391 | Single bulged G | homologous IL_4LFB_036 IL_00225.13 | |
| IL_4V74_043 | 1/AA/933:935, 1/AA/1380:1384 | Minor groove platform | homologous IL_5J7L_041 IL_47078.3 | |
| IL_4V74_044 | 1/AA/953:954, 1/AA/1226:1228 | No text annotation | homologous IL_6CZR_150 NA | |
| IL_4V74_045 | 1/AA/993:997, 1/AA/1044:1045 | Minor groove platform | geometric IL_5J7L_043 IL_47078.3 | |
| IL_4V74_046 | 1/AA/998:999, 1/AA/1041:1043 | Single stack bend | homologous IL_5J7L_044 IL_26793.1 | |
| IL_4V74_047 | 1/AA/1048:1050, 1/AA/1208:1209 | Single bulged U | homologous IL_5J7L_046 IL_89505.4 | |
| IL_4V74_048 | 1/AA/1051:1056, 1/AA/1204:1207 | No text annotation | homologous IL_5J7L_362 IL_49612.1 | |
| IL_4V74_049 | 1/AA/1057:1058, 1/AA/1199:1203 | Minor groove platform | homologous IL_5J7L_048 IL_95583.2 | |
| IL_4V74_050 | 1/AA/1059:1061, 1/AA/1195:1198 | No text annotation | ||
| IL_4V74_051 | 1/AA/1061:1063, 1/AA/1193:1195 | No text annotation | ||
| IL_4V74_052 | 1/AA/1124:1128, 1/AA/1144:1149 | No text annotation | homologous IL_5J7L_051 IL_06691.1 | |
| IL_4V74_053 | 1/AA/1129:1132, 1/AA/1142:1143 | Minor groove platform | homologous IL_5J7L_052 IL_15052.4 | |
| IL_4V74_054 | 1/AA/1158:1161, 1/AA/1175:1181 | No text annotation | geometric IL_5J7L_053 IL_42032.1 | |
| IL_4V74_055 | 1/AA/1247:1253, 1/AA/1284:1290 | No text annotation | homologous IL_5J7L_054 IL_09129.2 | |
| IL_4V74_056 | 1/AA/1255:1258, 1/AA/1277:1282 | 180 degree turn | homologous IL_4LFB_052 IL_11344.2 | |
| IL_4V74_057 | 1/AA/1259:1263, 1/AA/1272:1276 | Triple sheared | homologous IL_5J7L_056 IL_17948.2 | |
| IL_4V74_058 | 1/AA/1303:1309, 1/AA/1328:1334 | No text annotation | ||
| IL_4V74_059 | 1/AA/1399:1401, 1/AA/1501:1504 | No text annotation | geometric IL_5J7L_058 IL_61438.4 | |
| IL_4V74_060 | 1/AA/1401:1404, 1/AA/1497:1501 | No text annotation | geometric IL_4V88_464 NA | |
| IL_4V74_061 | 1/AA/1405:1409, 1/AA/1491:1496 | No text annotation | ||
| IL_4V74_182 | 1/AA/1412:1414, 1/AA/1486:1488 | Isolated non-canonical cWW pair | homologous IL_5J7L_061 IL_87907.2 | |
| IL_4V74_063 | 1/AA/1416:1419, 1/AA/1481:1484 | Double sheared | homologous IL_5J7L_062 IL_09705.15 | |
| IL_4V74_064 | 1/AA/1429:1435, 1/AA/1466:1471 | No text annotation | ||
| IL_4V74_065 | 1/AA/1440:1442, 1/AA/1460:1461 | Single bulged A | homologous IL_5J7L_064 IL_31462.6 | |
| IL_4V74_066 | 1/AA/1445:1448, 1/AA/1455:1457 | No text annotation | homologous IL_5J7L_065 IL_31531.3 | |
| IL_4V74_067 | 1/BA/24:30, 1/BA/510:516 | Triple sheared with non-canonical cWW | homologous IL_7A0S_001 IL_04021.2 | |
| IL_4V74_068 | 1/BA/36:37, 1/BA/442:444 | Single bulged A | homologous IL_5J7L_246 IL_31462.6 | |
| IL_4V74_069 | 1/BA/43:44, 1/BA/434:436 | Minor groove platform | homologous IL_7A0S_003 IL_51454.3 | |
| IL_4V74_070 | 1/BA/75:76, 1/BA/110:112 | No text annotation | ||
| IL_4V74_071 | 1/BA/81:85, 1/BA/97:105 | No text annotation | ||
| IL_4V74_072 | 1/BA/183:184, 1/BA/212:214 | Single stack bend | homologous IL_5J7L_249 IL_90729.1 | |
| IL_4V74_073 | 1/BA/188:194, 1/BA/201:208 | 8x7 Sarcin-Ricin; G-bulge | homologous IL_5J7L_250 IL_04346.10 | |
| IL_4V74_074 | 1/BA/239:245, 1/BA/253:258 | 7x6 Sarcin-Ricin; G-bulge | homologous IL_5J7L_251 IL_26307.2 | |
| IL_4V74_075 | 1/BA/269:271, 1/BA/366:370 | No text annotation | homologous IL_5J7L_252 IL_47972.1 | |
| IL_4V74_076 | 1/BA/274:281, 1/BA/359:363 | No text annotation | ||
| IL_4V74_077 | 1/BA/293:295, 1/BA/343:347 | No text annotation | ||
| IL_4V74_078 | 1/BA/536:539, 1/BA/554:557 | Double sheared | homologous IL_5J7L_256 IL_09705.15 | |
| IL_4V74_079 | 1/BA/564:566, 1/BA/575:577 | Isolated non-canonical cWW pair | homologous IL_7A0S_011 IL_07785.1 | |
| IL_4V74_080 | 1/BA/606:610, 1/BA/618:622 | AAA cross-strand stack | homologous IL_7A0S_013 IL_66798.2 | |
| IL_4V74_081 | 1/BA/672:674, 1/BA/806:808 | Isolated non-canonical cWW pair | homologous IL_5J7L_259 IL_87907.2 | |
| IL_4V74_082 | 1/BA/674:678, 1/BA/799:806 | tHW-tHW cross-strand stack | geometric IL_5TBW_028 NA | |
| IL_4V74_083 | 1/BA/697:698, 1/BA/763:765 | Single bulged A | geometric IL_7RQB_019 NA | |
| IL_4V74_084 | 1/BA/702:703, 1/BA/728:730 | Single bulged G | homologous IL_7A0S_017 IL_00225.13 | |
| IL_4V74_085 | 1/BA/703:707, 1/BA/724:728 | Triple sheared | geometric IL_2A64_005 IL_50730.2 | |
| IL_4V74_086 | 1/BA/738:740, 1/BA/757:758 | Major groove platform | homologous IL_4WF9_026 IL_48076.6 | |
| IL_4V74_087 | 1/BA/775:777, 1/BA/787:791 | Multiple bulged bases | geometric IL_5J7L_265 IL_06549.2 | |
| IL_4V74_088 | 1/BA/844:848, 1/BA/930:934 | No text annotation | ||
| IL_4V74_089 | 1/BA/850:851, 1/BA/926:928 | Single stack bend | homologous IL_5J7L_269 IL_26793.1 | |
| IL_4V74_090 | 1/BA/856:862, 1/BA/915:921 | 7x7 Sarcin-Ricin with intercalated A; G-bulge | geometric IL_5TBW_038 NA | |
| IL_4V74_091 | 1/BA/862:863, 1/BA/913:915 | Single bulged G | homologous IL_5J7L_271 IL_00225.13 | |
| IL_4V74_092 | 1/BA/864:868, 1/BA/909:912 | C-loop | homologous IL_5J7L_272 IL_26222.2 | |
| IL_4V74_093 | 1/BA/870:872, 1/BA/905:907 | Isolated non-canonical cWW pair | homologous IL_5J7L_273 IL_28037.2 | |
| IL_4V74_094 | 1/BA/875:879, 1/BA/898:902 | Triple sheared | homologous IL_5J7L_274 IL_17948.2 | |
| IL_4V74_095 | 1/BA/880:881, 1/BA/895:897 | Single bulged A | geometric IL_4V9F_032 IL_31462.6 | |
| IL_4V74_183 | 1/BA/953:955, 1/BA/962:964 | Isolated non-canonical cWW contact | geometric IL_7VFT_005 NA | |
| IL_4V74_096 | 1/BA/994:996, 1/BA/1159:1160 | No text annotation | ||
| IL_4V74_097 | 1/BA/996:1002, 1/BA/1153:1159 | No text annotation | ||
| IL_4V74_098 | 1/BA/1004:1011, 1/BA/1150:1151 | SSU/LSU pseudoknot | geometric IL_4WF9_037 IL_41203.4 | |
| IL_4V74_099 | 1/BA/1011:1013, 1/BA/1149:1150 | Single bulged U | homologous IL_5J7L_279 IL_89505.4 | |
| IL_4V74_100 | 1/BA/1018:1024, 1/BA/1140:1144 | Kink-turn related | homologous IL_4WF9_039 IL_57188.5 | |
| IL_4V74_101 | 1/BA/1024:1030, 1/BA/1124:1140 | No text annotation | geometric IL_5J7L_281 IL_50715.3 | |
| IL_4V74_102 | 1/BA/1031:1034, 1/BA/1121:1123 | Isolated non-canonical cWW pair | homologous IL_7A0S_038 IL_57744.1 | |
| IL_4V74_103 | 1/BA/1038:1041, 1/BA/1114:1117 | Tandem non-canonical cWW pairs | homologous IL_5J7L_283 IL_85033.2 | |
| IL_4V74_104 | 1/BA/1043:1051, 1/BA/1108:1112 | Kink-turn | homologous IL_7RQB_042 NA | |
| IL_4V74_105 | 1/BA/1059:1062, 1/BA/1076:1079 | No text annotation | homologous IL_6PRV_001 IL_92446.2 | |
| IL_4V74_184 | 1/BA/1087:1090, 1/BA/1101:1102 | Single stack bend | geometric IL_5J7L_249 IL_90729.1 | |
| IL_4V74_192 | 1/BA/1196:1198, 1/BA/1247:1250 | Isolated cWS basepair | homologous IL_5J7L_286 IL_42997.3 | |
| IL_4V74_109 | 1/BA/1202:1206, 1/BA/1240:1243 | No text annotation | homologous IL_5J7L_287 IL_91920.1 | |
| IL_4V74_110 | 1/BA/1208:1215, 1/BA/1234:1238 | Kink-turn | homologous IL_7A0S_043 IL_70923.9 | |
| IL_4V74_111 | 1/BA/1262:1269, 1/BA/2011:2017 | 8x7 Sarcin-Ricin; G-bulge | homologous IL_7RQB_049 NA | |
| IL_4V74_112 | 1/BA/1310:1313, 1/BA/1603:1604 | Major groove platform | geometric IL_5T5A_002 IL_48076.6 | |
| IL_4V74_113 | 1/BA/1319:1323, 1/BA/1331:1333 | C-loop | homologous IL_5J7L_291 IL_63596.11 | |
| IL_4V74_114 | 1/BA/1351:1355, 1/BA/1376:1380 | UAA/GAN | homologous IL_7A0S_048 IL_89021.2 | |
| IL_4V74_115 | 1/BA/1357:1361, 1/BA/1370:1374 | tSH-tHW-tHS | homologous IL_5J7L_293 IL_17136.7 | |
| IL_4V74_116 | 1/BA/1415:1416, 1/BA/1582:1587 | No text annotation | homologous IL_5J7L_294 IL_87211.1 | |
| IL_4V74_117 | 1/BA/1417:1421, 1/BA/1577:1581 | UAA/GAN | homologous IL_5J7L_295 IL_38507.2 | |
| IL_4V74_118 | 1/BA/1432:1435, 1/BA/1557:1561 | No text annotation | ||
| IL_4V74_119 | 1/BA/1437:1440, 1/BA/1551:1555 | No text annotation | ||
| IL_4V74_120 | 1/BA/1468:1471, 1/BA/1520:1524 | No text annotation | homologous IL_5J7L_299 IL_68574.4 | |
| IL_4V74_121 | 1/BA/1474:1478, 1/BA/1513:1517 | tSH-tHW-tHS | homologous IL_5J7L_300 IL_38862.4 | |
| IL_4V74_185 | 1/BA/1481:1482, 1/BA/1507:1510 | 180 degree turn | homologous IL_5J7L_301 IL_00881.1 | |
| IL_4V74_123 | 1/BA/1488:1491, 1/BA/1499:1501 | Isolated non-canonical cWW with bulges | geometric IL_3KTW_002 NA | |
| IL_4V74_124 | 1/BA/1526:1529, 1/BA/1542:1546 | UAA/GAN variation | homologous IL_5J7L_303 IL_23774.1 | |
| IL_4V74_125 | 1/BA/1651:1656, 1/BA/2004:2006 | No text annotation | homologous IL_5J7L_304 IL_12566.4 | |
| IL_4V74_126 | 1/BA/1662:1665, 1/BA/1995:1998 | No text annotation | ||
| IL_4V74_127 | 1/BA/1666:1669, 1/BA/1993:1994 | Major groove platform; stack outside cWW | geometric IL_4V9F_008 IL_50694.7 | |
| IL_4V74_186 | 1/BA/1666:1674, 1/BA/1990:1994 | No text annotation | homologous IL_7A0S_109 IL_22854.4 | |
| IL_4V74_128 | 1/BA/1669:1674, 1/BA/1990:1993 | Intercalated tWH | homologous IL_7A0S_062 IL_76758.2 | |
| IL_4V74_129 | 1/BA/1686:1691, 1/BA/1696:1702 | tSH-tSH-tHH-tHS | geometric IL_4V9F_063 IL_47346.2 | |
| IL_4V74_130 | 1/BA/1712:1718, 1/BA/1742:1746 | 6x5 Sarcin-Ricin; G-bulge | homologous IL_5J7L_309 IL_88269.4 | |
| IL_4V74_131 | 1/BA/1720:1724, 1/BA/1736:1740 | Triple sheared | homologous IL_5J7L_310 IL_50730.2 | |
| IL_4V74_132 | 1/BA/1727:1728, 1/BA/1731:1733 | Single bulged C | geometric IL_3SNP_003 IL_61258.15 | |
| IL_4V74_133 | 1/BA/1770:1771, 1/BA/1980:1982 | Single bulged A | homologous IL_5J7L_312 IL_31462.6 | |
| IL_4V74_134 | 1/BA/1798:1804, 1/BA/1813:1821 | Kink-turn related | homologous IL_5J7L_313 IL_17069.5 | |
| IL_4V74_135 | 1/BA/1837:1840, 1/BA/1902:1903 | Minor groove platform, major groove intercalation | homologous IL_5J7L_314 IL_95583.2 | |
| IL_4V74_136 | 1/BA/1841:1842, 1/BA/1898:1901 | Major groove intercalation | homologous IL_5J7L_315 IL_82107.4 | |
| IL_4V74_187 | 1/BA/1846:1860, 1/BA/1882:1894 | No text annotation | ||
| IL_4V74_137 | 1/BA/1864:1867, 1/BA/1874:1878 | UAA/GAN variation | homologous IL_5J7L_317 IL_77691.5 | |
| IL_4V74_138 | 1/BA/1933:1934, 1/BA/1964:1967 | Bulged stacked bases | homologous IL_7A0S_071 IL_22551.4 | |
| IL_4V74_139 | 1/BA/1934:1945, 1/BA/1961:1964 | No text annotation | geometric IL_4WF9_077 IL_42218.2 | |
| IL_4V74_140 | 1/BA/2050:2052, 1/BA/2617:2618 | Major groove platform | homologous IL_5J7L_320 IL_48076.6 | |
| IL_4V74_141 | 1/BA/2054:2056, 1/BA/2612:2615 | No text annotation | homologous IL_4WF9_079 IL_83389.2 | |
| IL_4V74_142 | 1/BA/2067:2069, 1/BA/2442:2443 | Single bulged U | homologous IL_7RQB_080 NA | |
| IL_4V74_143 | 1/BA/2070:2071, 1/BA/2438:2441 | Minor groove platform | homologous IL_5J7L_324 IL_51454.3 | |
| IL_4V74_144 | 1/BA/2081:2083, 1/BA/2236:2239 | Isolated tHS basepair with bulges | homologous IL_5J7L_325 IL_85599.2 | |
| IL_4V74_145 | 1/BA/2085:2087, 1/BA/2232:2234 | Isolated non-canonical cWW pair | homologous IL_7A0S_078 IL_28037.2 | |
| IL_4V74_146 | 1/BA/2103:2105, 1/BA/2184:2186 | Isolated non-canonical cWW pair | geometric IL_4P3T_001 NA | |
| IL_4V74_147 | 1/BA/2108:2110, 1/BA/2179:2181 | Isolated non-canonical cWW pair | geometric IL_3RG5_002 IL_28037.2 | |
| IL_4V74_148 | 1/BA/2110:2120, 1/BA/2178:2179 | Multiple bulged bases | geometric IL_7V9E_001 NA | |
| IL_4V74_149 | 1/BA/2124:2127, 1/BA/2161:2174 | No text annotation | ||
| IL_4V74_150 | 1/BA/2128:2137, 1/BA/2154:2160 | No text annotation | ||
| IL_4V74_151 | 1/BA/2202:2204, 1/BA/2220:2221 | Single bulged U | homologous IL_5J7L_331 IL_89505.4 | |
| IL_4V74_152 | 1/BA/2350:2353, 1/BA/2364:2367 | Double sheared | homologous IL_7RQB_089 NA | |
| IL_4V74_153 | 1/BA/2401:2403, 1/BA/2414:2415 | No text annotation | ||
| IL_4V74_154 | 1/BA/2454:2455, 1/BA/2496:2498 | Major groove platform | homologous IL_7A0S_084 IL_48076.6 | |
| IL_4V74_155 | 1/BA/2457:2459, 1/BA/2493:2494 | Major groove platform | geometric IL_4V9F_086 IL_07039.3 | |
| IL_4V74_156 | 1/BA/2459:2461, 1/BA/2489:2493 | Major groove minor groove platform with extra cWW | homologous IL_5J7L_337 IL_51387.2 | |
| IL_4V74_157 | 1/BA/2466:2470, 1/BA/2480:2484 | Triple sheared | homologous IL_5J7L_338 IL_17948.2 | |
| IL_4V74_158 | 1/BA/2507:2508, 1/BA/2580:2582 | Major groove platform | homologous IL_7RQB_096 NA | |
| IL_4V74_159 | 1/BA/2510:2512, 1/BA/2574:2578 | Isolated non-canonical cWW with bulges | homologous IL_5J7L_340 IL_07785.1 | |
| IL_4V74_160 | 1/BA/2512:2513, 1/BA/2571:2574 | No text annotation | geometric IL_5J7L_341 IL_42626.2 | |
| IL_4V74_161 | 1/BA/2522:2523, 1/BA/2540:2543 | Major groove platform with intercalation | homologous IL_4WF9_097 IL_02555.1 | |
| IL_4V74_162 | 1/BA/2591:2592, 1/BA/2601:2603 | No text annotation | ||
| IL_4V74_163 | 1/BA/2636:2640, 1/BA/2774:2782 | tSH-tHS-tHW | homologous IL_4WF9_099 IL_04638.3 | |
| IL_4V74_164 | 1/BA/2652:2658, 1/BA/2663:2668 | Sarcin-Ricin target in LSU H95; G-bulge | geometric IL_7A0S_094 IL_16458.4 | |
| IL_4V74_165 | 1/BA/2680:2684, 1/BA/2725:2727 | C-loop | homologous IL_5J7L_347 IL_63596.11 | |
| IL_4V74_166 | 1/BA/2687:2691, 1/BA/2718:2722 | No text annotation | homologous IL_5J7L_348 IL_23774.1 | |
| IL_4V74_167 | 1/BA/2695:2696, 1/BA/2711:2714 | Multiple bulged bases | homologous IL_5J7L_349 IL_42626.2 | |
| IL_4V74_168 | 1/BA/2737:2742, 1/BA/2762:2767 | UAA/GAN with extra cWW | homologous IL_4WF9_104 IL_49767.8 | |
| IL_4V74_169 | 1/BA/2806:2811, 1/BA/2889:2892 | No text annotation | geometric IL_5J7L_351 IL_29471.1 | |
| IL_4V74_170 | 1/BA/2838:2839, 1/BA/2878:2880 | Major groove intercalation | homologous IL_4WF9_106 IL_66635.5 | |
| IL_4V74_171 | 1/BA/2843:2846, 1/BA/2870:2874 | Multiple bulged bases with non-canonical cWW | homologous IL_5J7L_353 IL_64231.5 | |
| IL_4V74_172 | 1/BA/2847:2852, 1/BA/2865:2869 | No text annotation | homologous IL_7A0S_101 IL_70411.2 | |
| IL_4V74_173 | 1/BB/17:18, 1/BB/65:67 | Major groove intercalation | homologous IL_5J7L_355 IL_31462.6 | |
| IL_4V74_174 | 1/BB/23:28, 1/BB/56:60 | No text annotation | homologous IL_7A0S_103 IL_18472.4 | |
| IL_4V74_175 | 1/BB/30:31, 1/BB/51:54 | Major groove minor groove platform; mini C-loop | homologous IL_4V9F_103 IL_68140.4 | |
| IL_4V74_176 | 1/BB/34:38, 1/BB/44:48 | Symmetric double minor groove platform | homologous IL_4V9F_104 IL_58103.11 | |
| IL_4V74_177 | 1/BB/71:79, 1/BB/97:105 | Bacterial 5S Loop E | homologous IL_5J7L_359 IL_56455.6 |
Problematic loops
| # | loop id | Problem | Sequence |
|---|---|---|---|
| IL_4V74_009 | No text annotation | ||
| IL_4V74_018 | C-loop with extra cWW pair | ||
| IL_4V74_019 | No text annotation | ||
| IL_4V74_023 | No text annotation | ||
| IL_4V74_032 | Isolated cWS basepair | ||
| IL_4V74_179 | No text annotation | ||
| IL_4V74_180 | Isolated non-canonical cWW pair | ||
| IL_4V74_181 | Isolated near basepair | ||
| IL_4V74_062 | Tandem non-canonical cWW pairs | ||
| IL_4V74_106 | No text annotation | ||
| IL_4V74_107 | No text annotation | ||
| IL_4V74_108 | No text annotation | ||
| IL_4V74_122 | No text annotation | ||
| IL_4V74_188 | Isolated near basepair |
Valid loops
| 3D | Loop id | Location | Annotation; motif group | Mapped info |
|---|---|---|---|---|
| J3_4V74_001 | 1/AA/46:47, 1/AA/361:367, 1/AA/393:395 | No text annotation | homologous J3_5J7L_001 J3_67856.4 | |
| J3_4V74_026 | 1/AA/46:52, 1/AA/359:367, 1/AA/393:395 | No text annotation | homologous J3_5J7L_050 J3_46317.4 | |
| J3_4V74_002 | 1/AA/586:588, 1/AA/651:654, 1/AA/754:755 | No text annotation | homologous J3_6CZR_016 NA | |
| J3_4V74_027 | 1/AA/586:588, 1/AA/651:655, 1/AA/751:755 | No text annotation | homologous J3_4LFB_015 J3_17385.4 | |
| J3_4V74_003 | 1/AA/672:673, 1/AA/717:725, 1/AA/732:734 | No text annotation | homologous J3_5J7L_003 J3_11934.4 | |
| J3_4V74_004 | 1/AA/826:829, 1/AA/857:861, 1/AA/868:874 | No text annotation | homologous J3_5J7L_004 J3_85054.4 | |
| J3_4V74_028 | 1/AA/936:939, 1/AA/1344:1350, 1/AA/1372:1379 | No text annotation | homologous J3_4LFB_002 J3_25303.4 | |
| J3_4V74_005 | 1/AA/943:946, 1/AA/1235:1237, 1/AA/1337:1340 | No text annotation | homologous J3_5J7L_005 J3_52655.4 | |
| J3_4V74_006 | 1/AA/955:962, 1/AA/973:984, 1/AA/1221:1225 | No text annotation | homologous J3_4LFB_004 J3_83516.4 | |
| J3_4V74_007 | 1/AA/990:993, 1/AA/1045:1047, 1/AA/1210:1215 | No text annotation | homologous J3_4LFB_005 J3_82572.1 | |
| J3_4V74_029 | 1/AA/990:997, 1/AA/1044:1047, 1/AA/1210:1215 | No text annotation | homologous J3_4LFB_016 J3_76475.2 | |
| J3_4V74_008 | 1/AA/1003:1006, 1/AA/1023:1027, 1/AA/1034:1037 | No text annotation | ||
| J3_4V74_009 | 1/AA/1063:1068, 1/AA/1107:1113, 1/AA/1187:1193 | No text annotation | homologous J3_5J7L_008 J3_08394.3 | |
| J3_4V74_010 | 1/AA/1073:1074, 1/AA/1083:1087, 1/AA/1098:1102 | No text annotation | homologous J3_6CZR_024 NA | |
| J3_4V74_011 | 1/AA/1116:1118, 1/AA/1155:1158, 1/AA/1181:1184 | No text annotation | homologous J3_5J7L_010 J3_82365.4 | |
| J3_4V74_030 | 1/AA/1116:1118, 1/AA/1155:1161, 1/AA/1175:1184 | No text annotation | homologous J3_4LFB_018 J3_17791.2 | |
| J3_4V74_012 | 1/AA/1237:1241, 1/AA/1296:1303, 1/AA/1334:1337 | No text annotation | homologous J3_4LFB_009 J3_37047.6 | |
| J3_4V74_031 | 1/BA/30:31, 1/BA/474:484, 1/BA/496:510 | No text annotation | homologous J3_9DFE_002 J3_92134.2 | |
| J3_4V74_032 | 1/BA/32:35, 1/BA/445:461, 1/BA/468:473 | No text annotation | homologous J3_5J7L_067 J3_30040.2 | |
| J3_4V74_013 | 1/BA/56:57, 1/BA/70:75, 1/BA/112:114 | No text annotation | ||
| J3_4V74_033 | 1/BA/56:57, 1/BA/70:76, 1/BA/110:114 | No text annotation | homologous J3_5J7L_037 J3_35667.2 | |
| J3_4V74_034 | 1/BA/297:301, 1/BA/316:325, 1/BA/337:341 | No text annotation | homologous J3_5J7L_068 J3_46299.2 | |
| J3_4V74_014 | 1/BA/683:689, 1/BA/773:775, 1/BA/791:794 | No text annotation | homologous J3_5J7L_038 J3_64189.2 | |
| J3_4V74_015 | 1/BA/698:700, 1/BA/732:736, 1/BA/760:763 | No text annotation | homologous J3_7RQB_005 NA | |
| J3_4V74_016 | 1/BA/1055:1057, 1/BA/1081:1087, 1/BA/1102:1104 | No text annotation | homologous J3_8VTW_003 NA | |
| J3_4V74_017 | 1/BA/1298:1303, 1/BA/1625:1627, 1/BA/1639:1642 | No text annotation | homologous J3_5J7L_041 J3_32852.6 | |
| J3_4V74_018 | 1/BA/1306:1309, 1/BA/1605:1611, 1/BA/1620:1622 | No text annotation | homologous J3_5J7L_042 J3_19545.2 | |
| J3_4V74_035 | 1/BA/1310:1314, 1/BA/1338:1345, 1/BA/1601:1604 | No text annotation | ||
| J3_4V74_019 | 1/BA/1313:1314, 1/BA/1338:1345, 1/BA/1601:1603 | No text annotation | ||
| J3_4V74_036 | 1/BA/1424:1429, 1/BA/1564:1565, 1/BA/1568:1574 | No text annotation | homologous J3_7A0S_019 J3_34864.2 | |
| J3_4V74_037 | 1/BA/2091:2093, 1/BA/2196:2200, 1/BA/2223:2228 | Kink-turn in J3 | homologous J3_5J7L_044 J3_89368.5 | |
| J3_4V74_038 | 1/BA/2282:2284, 1/BA/2384:2396, 1/BA/2420:2427 | No text annotation | ||
| J3_4V74_021 | 1/BA/2295:2299, 1/BA/2317:2323, 1/BA/2332:2337 | No text annotation | homologous J3_5J7L_071 J3_44961.1 | |
| J3_4V74_022 | 1/BA/2517:2520, 1/BA/2545:2547, 1/BA/2561:2567 | No text annotation | homologous J3_5J7L_046 J3_32601.5 | |
| J3_4V74_023 | 1/BA/2789:2791, 1/BA/2805:2806, 1/BA/2892:2894 | No text annotation | homologous J3_5J7L_047 J3_30104.1 | |
| J3_4V74_024 | 1/BA/2812:2815, 1/BA/2831:2836, 1/BA/2882:2888 | No text annotation | homologous J3_5J7L_048 J3_64069.1 | |
| J3_4V74_025 | 1/BB/9:16, 1/BB/68:70, 1/BB/106:111 | No text annotation | ||
| J4_4V74_001 | 1/A1/7:10, 1/A1/25:27, 1/A1/43:49, 1/A1/65:66 | tRNA junction | homologous J4_5AXM_001 J4_70449.28 | |
| J4_4V74_002 | 1/A3/7:10, 1/A3/26:28, 1/A3/44:50, 1/A3/66:67 | No text annotation | homologous J4_7EQJ_002 J4_70449.28 | |
| J4_4V74_003 | 1/AA/115:122, 1/AA/239:240, 1/AA/286:291, 1/AA/309:312 | No text annotation | ||
| J4_4V74_004 | 1/AA/142:144, 1/AA/178:184, 1/AA/193:198, 1/AA/219:221 | No text annotation | homologous J4_5J7L_002 J4_01665.1 | |
| J4_4V74_005 | 1/AA/575:577, 1/AA/764:769, 1/AA/810:821, 1/AA/879:880 | No text annotation | homologous J4_6CZR_013 NA | |
| J4_4V74_006 | 1/BA/268:269, 1/BA/370:375, 1/BA/399:406, 1/BA/421:424 | No text annotation | homologous J4_7A0S_001 J4_45801.6 | |
| J4_4V74_007 | 1/BA/297:301, 1/BA/316:319, 1/BA/323:325, 1/BA/337:341 | No text annotation | homologous J4_5J7L_019 J4_71729.5 | |
| J4_4V74_008 | 1/BA/601:604, 1/BA/624:628, 1/BA/635:638, 1/BA/650:656 | No text annotation | homologous J4_5J7L_020 J4_60168.1 | |
| J4_4V74_009 | 1/BA/1270:1276, 1/BA/1294:1295, 1/BA/1645:1648, 1/BA/2009:2010 | No text annotation | homologous J4_4WF9_004 J4_64571.5 | |
| J4_4V74_010 | 1/BA/1347:1350, 1/BA/1381:1385, 1/BA/1402:1405, 1/BA/1597:1599 | No text annotation | ||
| J4_4V74_011 | 1/BA/1444:1445, 1/BA/1466:1467, 1/BA/1525:1526, 1/BA/1546:1547 | No text annotation | homologous J4_5J7L_024 J4_24280.2 | |
| J4_4V74_012 | 1/BA/1772:1776, 1/BA/1788:1792, 1/BA/1827:1830, 1/BA/1975:1979 | No text annotation | homologous J4_4WF9_007 J4_61477.5 | |
| J4_4V74_013 | 1/BA/1833:1835, 1/BA/1905:1906, 1/BA/1924:1933, 1/BA/1967:1972 | No text annotation | homologous J4_5J7L_026 J4_93343.1 | |
| J4_4V74_014 | 1/BA/2285:2289, 1/BA/2343:2347, 1/BA/2370:2372, 1/BA/2381:2383 | No text annotation | homologous J4_5J7L_027 J4_04930.6 | |
| J4_4V74_015 | 1/BA/2643:2648, 1/BA/2672:2676, 1/BA/2731:2735, 1/BA/2769:2771 | No text annotation | ||
| J5_4V74_001 | 1/AA/36:39, 1/AA/403:406, 1/AA/436:440, 1/AA/497:500, 1/AA/545:548 | No text annotation | homologous J5_5J7L_001 J5_92941.1 | |
| J5_4V74_002 | 1/AA/36:39, 1/AA/403:406, 1/AA/436:442, 1/AA/492:500, 1/AA/545:548 | No text annotation | homologous J5_5J7L_002 J5_67416.1 | |
| J5_4V74_003 | 1/AA/58:61, 1/AA/106:113, 1/AA/314:316, 1/AA/337:339, 1/AA/350:354 | No text annotation | homologous J5_4LFB_002 J5_59910.6 | |
| J5_4V74_004 | 1/BA/47:54, 1/BA/116:121, 1/BA/130:131, 1/BA/148:150, 1/BA/176:178 | No text annotation | homologous J5_5J7L_013 J5_01737.2 | |
| J5_4V74_005 | 1/BA/531:533, 1/BA/560:564, 1/BA/577:579, 1/BA/1261:1262, 1/BA/2017:2018 | No text annotation | homologous J5_4WF9_003 J5_43153.5 | |
| J5_4V74_006 | 1/BA/584:589, 1/BA/668:671, 1/BA/809:812, 1/BA/1195:1196, 1/BA/1250:1256 | No text annotation | homologous J5_4WF9_004 J5_74302.5 | |
| J5_4V74_007 | 1/BA/1674:1682, 1/BA/1706:1707, 1/BA/1751:1752, 1/BA/1756:1764, 1/BA/1988:1990 | No text annotation | homologous J5_5J7L_016 J5_62523.6 | |
| J5_4V74_010 | 1/BA/2057:2064, 1/BA/2446:2454, 1/BA/2498:2506, 1/BA/2583:2588, 1/BA/2606:2611 | No text annotation | ||
| J5_4V74_009 | 1/BA/2074:2077, 1/BA/2243:2247, 1/BA/2257:2259, 1/BA/2281:2282, 1/BA/2427:2435 | No text annotation | ||
| J6_4V74_001 | 1/BA/45:46, 1/BA/179:183, 1/BA/214:224, 1/BA/231:235, 1/BA/262:266, 1/BA/426:433 | No text annotation | ||
| J6_4V74_002 | 1/BA/2074:2077, 1/BA/2243:2247, 1/BA/2257:2259, 1/BA/2281:2284, 1/BA/2384:2396, 1/BA/2420:2435 | No text annotation | ||
| J7_4V74_001 | 1/BA/8:15, 1/BA/525:531, 1/BA/2018:2023, 1/BA/2040:2043, 1/BA/2625:2630, 1/BA/2788:2789, 1/BA/2894:2895 | No text annotation | ||
| J7_4V74_002 | 1/BA/817:822, 1/BA/835:838, 1/BA/940:946, 1/BA/971:976, 1/BA/987:991, 1/BA/1163:1164, 1/BA/1185:1190 | No text annotation |
Problematic loops
| # | loop id | Problem | Sequence |
|---|---|---|---|
| J3_4V74_020 | No text annotation | ||
| J5_4V74_008 | No text annotation |
Coloring options: