J4_4V75_005

3D structure

PDB id

4V75 (explore in PDB, NAKB, or RNA 3D Hub)

Description

E. coli 70S-fMetVal-tRNAVal-tRNAfMet complex in classic post-translocation state (post1)

Experimental method

ELECTRON MICROSCOPY

Resolution

12 Å

Loop

Sequence

GCG*CGAAAG*CCGUAAACGAUG*CC

Length

23 nucleotides

Bulged bases

4V75|1|AA|C|576, 4V75|1|AA|G|818, 4V75|1|AA|U|820

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J4_4V75_005 not in the Motif Atlas

Homologous match to J4_5J7L_003

Geometric discrepancy: 0.4001

The information below is about J4_5J7L_003

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J4_61885.6

Basepair signature

cWW-cWW-cWW-F-F-tHW-F-F-F-F-F-cWW-F-F

Number of instances in this motif group

4

Unit IDs

4V75|1|AA|G|575
4V75|1|AA|C|576
4V75|1|AA|G|577
*
4V75|1|AA|C|764
4V75|1|AA|G|765
4V75|1|AA|A|766
4V75|1|AA|A|767
4V75|1|AA|A|768
4V75|1|AA|G|769
*
4V75|1|AA|C|810
4V75|1|AA|C|811
4V75|1|AA|G|812
4V75|1|AA|U|813
4V75|1|AA|A|814
4V75|1|AA|A|815
4V75|1|AA|A|816
4V75|1|AA|C|817
4V75|1|AA|G|818
4V75|1|AA|A|819
4V75|1|AA|U|820
4V75|1|AA|G|821
*
4V75|1|AA|C|879
4V75|1|AA|C|880

Current chains

Chain AA

16S ribosomal RNA

Nearby chains

Chain AH

30S ribosomal protein S8

Chain AK

30S ribosomal protein S11

Chain AL

30S ribosomal protein S12

Chain AO

30S ribosomal protein S15

Chain AQ

30S ribosomal protein S17

Chain BA

Large subunit ribosomal RNA; LSU rRNA