4V75 Hairpin, Internal, and multi-helix Junction Loop Motifs
Valid loops
No loops found
Problematic loops
| # | loop id | Problem | Sequence |
|---|---|---|---|
| HL_4V75_001 | tRNA D-loop | ||
| HL_4V75_002 | tRNA anticodon loop | ||
| HL_4V75_003 | T-loop with 2 stacked bulged bases | ||
| HL_4V75_004 | No text annotation | ||
| HL_4V75_005 | tRNA anticodon loop | ||
| HL_4V75_006 | T-loop with 2 stacked bulged bases | ||
| HL_4V75_007 | No text annotation | ||
| HL_4V75_008 | No text annotation | ||
| HL_4V75_111 | No text annotation | ||
| HL_4V75_009 | GNRA | ||
| HL_4V75_010 | GNRA | ||
| HL_4V75_011 | UNCG | ||
| HL_4V75_012 | GNRA related | ||
| HL_4V75_013 | No text annotation | ||
| HL_4V75_014 | No text annotation | ||
| HL_4V75_015 | UNCG | ||
| HL_4V75_016 | GNRA | ||
| HL_4V75_017 | UNCG | ||
| HL_4V75_018 | No text annotation | ||
| HL_4V75_019 | No text annotation | ||
| HL_4V75_020 | GNRA-like with tWH | ||
| HL_4V75_021 | No text annotation | ||
| HL_4V75_022 | GNRA | ||
| HL_4V75_023 | No text annotation | ||
| HL_4V75_024 | No text annotation | ||
| HL_4V75_025 | GNRA | ||
| HL_4V75_026 | UNCG variation | ||
| HL_4V75_027 | No text annotation | ||
| HL_4V75_112 | No text annotation | ||
| HL_4V75_028 | GNRA | ||
| HL_4V75_029 | No text annotation | ||
| HL_4V75_030 | GNRA | ||
| HL_4V75_031 | T-loop related | ||
| HL_4V75_032 | No text annotation | ||
| HL_4V75_033 | GNRA | ||
| HL_4V75_034 | GNRA | ||
| HL_4V75_035 | T-loop with 3 stacked bulged bases | ||
| HL_4V75_036 | No text annotation | ||
| HL_4V75_037 | UNCG | ||
| HL_4V75_038 | GNRA | ||
| HL_4V75_039 | No text annotation | ||
| HL_4V75_040 | No text annotation | ||
| HL_4V75_041 | No text annotation | ||
| HL_4V75_042 | No text annotation | ||
| HL_4V75_043 | No text annotation | ||
| HL_4V75_044 | No text annotation | ||
| HL_4V75_045 | No text annotation | ||
| HL_4V75_046 | No text annotation | ||
| HL_4V75_047 | No text annotation | ||
| HL_4V75_048 | No text annotation | ||
| HL_4V75_049 | T-loop with unstacked turn | ||
| HL_4V75_050 | No text annotation | ||
| HL_4V75_051 | No text annotation | ||
| HL_4V75_052 | GNRA | ||
| HL_4V75_053 | GNRA | ||
| HL_4V75_054 | No text annotation | ||
| HL_4V75_055 | T-loop with 2 stacked bulged bases | ||
| HL_4V75_056 | No text annotation | ||
| HL_4V75_057 | GNRA | ||
| HL_4V75_058 | GNRA | ||
| HL_4V75_059 | No text annotation | ||
| HL_4V75_060 | No text annotation | ||
| HL_4V75_061 | UNCG variation | ||
| HL_4V75_062 | No text annotation | ||
| HL_4V75_063 | No text annotation | ||
| HL_4V75_064 | GNRA | ||
| HL_4V75_065 | No text annotation | ||
| HL_4V75_066 | No text annotation | ||
| HL_4V75_067 | No text annotation | ||
| HL_4V75_068 | No text annotation | ||
| HL_4V75_069 | GNRA | ||
| HL_4V75_070 | T-loop with 2 stacked bulged bases | ||
| HL_4V75_071 | Pseudoknot geometry with 3' bulge | ||
| HL_4V75_072 | GNRA | ||
| HL_4V75_073 | No text annotation | ||
| HL_4V75_074 | No text annotation | ||
| HL_4V75_075 | Pseudoknot geometry with 3' bulge | ||
| HL_4V75_076 | No text annotation | ||
| HL_4V75_077 | Mini UNCG | ||
| HL_4V75_078 | No text annotation | ||
| HL_4V75_079 | GNRA | ||
| HL_4V75_080 | No text annotation | ||
| HL_4V75_081 | No text annotation | ||
| HL_4V75_082 | No text annotation | ||
| HL_4V75_083 | No text annotation | ||
| HL_4V75_084 | No text annotation | ||
| HL_4V75_085 | GNRA variation | ||
| HL_4V75_086 | No text annotation | ||
| HL_4V75_087 | No text annotation | ||
| HL_4V75_113 | No text annotation | ||
| HL_4V75_088 | No text annotation | ||
| HL_4V75_089 | UNCG | ||
| HL_4V75_090 | No text annotation | ||
| HL_4V75_091 | No text annotation | ||
| HL_4V75_092 | No text annotation | ||
| HL_4V75_093 | No text annotation | ||
| HL_4V75_094 | No text annotation | ||
| HL_4V75_110 | Pseudoknot geometry | ||
| HL_4V75_095 | GNRA | ||
| HL_4V75_096 | GNRA | ||
| HL_4V75_097 | No text annotation | ||
| HL_4V75_098 | No text annotation | ||
| HL_4V75_099 | No text annotation | ||
| HL_4V75_100 | No text annotation | ||
| HL_4V75_101 | GNRA | ||
| HL_4V75_102 | GNRA | ||
| HL_4V75_103 | Ribsomal LSU H95 | ||
| HL_4V75_104 | No text annotation | ||
| HL_4V75_105 | Mini UNCG | ||
| HL_4V75_106 | No text annotation | ||
| HL_4V75_107 | GNRA | ||
| HL_4V75_108 | No text annotation | ||
| HL_4V75_109 | Mini UNCG |
Valid loops
No loops found
Problematic loops
| # | loop id | Problem | Sequence |
|---|---|---|---|
| IL_4V75_001 | Single bulged G | ||
| IL_4V75_002 | Single bulged A | ||
| IL_4V75_003 | No text annotation | ||
| IL_4V75_004 | Minor groove platform | ||
| IL_4V75_005 | Multiple bulged bases | ||
| IL_4V75_006 | Minor groove platform with extra cWW | ||
| IL_4V75_007 | Minor groove platform | ||
| IL_4V75_008 | Major groove intercalation | ||
| IL_4V75_009 | No text annotation | ||
| IL_4V75_010 | Isolated cWH basepair | ||
| IL_4V75_011 | tWH-tWH-tHW-tHW | ||
| IL_4V75_012 | No text annotation | ||
| IL_4V75_013 | Kink-turn with non-sequential stacking | ||
| IL_4V75_194 | No text annotation | ||
| IL_4V75_014 | No text annotation | ||
| IL_4V75_015 | No text annotation | ||
| IL_4V75_195 | C-loop | ||
| IL_4V75_016 | Isolated near basepair | ||
| IL_4V75_196 | C-loop | ||
| IL_4V75_017 | C-loop with extra cWW pair | ||
| IL_4V75_197 | Single bulged G | ||
| IL_4V75_198 | No text annotation | ||
| IL_4V75_180 | No text annotation | ||
| IL_4V75_018 | No text annotation | ||
| IL_4V75_019 | No text annotation | ||
| IL_4V75_020 | tSH-tHW-tWW | ||
| IL_4V75_021 | No text annotation | ||
| IL_4V75_199 | Single stack bend | ||
| IL_4V75_022 | No text annotation | ||
| IL_4V75_023 | No text annotation | ||
| IL_4V75_024 | SSU/LSU pseudoknot | ||
| IL_4V75_025 | Kink-turn related | ||
| IL_4V75_026 | No text annotation | ||
| IL_4V75_027 | tSH-tHW-tHS | ||
| IL_4V75_028 | Major groove platform | ||
| IL_4V75_029 | Major groove minor groove platform with extra cWW | ||
| IL_4V75_200 | Major groove minor groove platform; mini C-loop | ||
| IL_4V75_030 | No text annotation | ||
| IL_4V75_031 | Major groove platform; stack outside cWW | ||
| IL_4V75_032 | Single stack bend | ||
| IL_4V75_033 | Tandem non-canonical cWW pairs | ||
| IL_4V75_034 | No text annotation | ||
| IL_4V75_035 | Kink-turn | ||
| IL_4V75_181 | Isolated non-canonical cWW pair | ||
| IL_4V75_036 | Left turn | ||
| IL_4V75_037 | tSH-tHW-tHS | ||
| IL_4V75_038 | 8x6 Sarcin-Ricin with inserted Y; G-bulge | ||
| IL_4V75_039 | Single bulged A | ||
| IL_4V75_040 | Isolated non-canonical cWW pair | ||
| IL_4V75_182 | Single bulged G | ||
| IL_4V75_041 | Minor groove platform | ||
| IL_4V75_042 | No text annotation | ||
| IL_4V75_043 | No text annotation | ||
| IL_4V75_044 | Single stack bend | ||
| IL_4V75_183 | Isolated non-canonical cWW pair | ||
| IL_4V75_184 | Isolated non-canonical cWW pair | ||
| IL_4V75_045 | Single bulged U | ||
| IL_4V75_046 | Isolated cWS basepair | ||
| IL_4V75_047 | Minor groove platform | ||
| IL_4V75_048 | Single bulged A | ||
| IL_4V75_049 | Isolated non-canonical cWW pair | ||
| IL_4V75_050 | No text annotation | ||
| IL_4V75_051 | Minor groove platform | ||
| IL_4V75_052 | No text annotation | ||
| IL_4V75_053 | No text annotation | ||
| IL_4V75_185 | No text annotation | ||
| IL_4V75_186 | Other IL | ||
| IL_4V75_054 | No text annotation | ||
| IL_4V75_055 | Double sheared with non-canonical cWW | ||
| IL_4V75_201 | No text annotation | ||
| IL_4V75_056 | No text annotation | ||
| IL_4V75_057 | No text annotation | ||
| IL_4V75_058 | No text annotation | ||
| IL_4V75_059 | Isolated non-canonical cWW pair | ||
| IL_4V75_060 | Isolated non-canonical cWW pair | ||
| IL_4V75_061 | Isolated non-canonical cWW pair | ||
| IL_4V75_062 | Double sheared | ||
| IL_4V75_063 | No text annotation | ||
| IL_4V75_064 | No text annotation | ||
| IL_4V75_065 | No text annotation | ||
| IL_4V75_066 | Triple sheared with non-canonical cWW | ||
| IL_4V75_067 | Single bulged A | ||
| IL_4V75_068 | Minor groove platform | ||
| IL_4V75_069 | Single stack bend | ||
| IL_4V75_070 | No text annotation | ||
| IL_4V75_071 | Single stack bend | ||
| IL_4V75_072 | 8x7 Sarcin-Ricin; G-bulge | ||
| IL_4V75_073 | 7x6 Sarcin-Ricin; G-bulge | ||
| IL_4V75_074 | No text annotation | ||
| IL_4V75_075 | No text annotation | ||
| IL_4V75_076 | No text annotation | ||
| IL_4V75_077 | No text annotation | ||
| IL_4V75_078 | Double sheared | ||
| IL_4V75_079 | Isolated non-canonical cWW pair | ||
| IL_4V75_080 | AAA cross-strand stack | ||
| IL_4V75_081 | No text annotation | ||
| IL_4V75_082 | tHW-tHW cross-strand stack | ||
| IL_4V75_083 | Single bulged A | ||
| IL_4V75_084 | Quadruple sheared | ||
| IL_4V75_085 | Major groove platform | ||
| IL_4V75_086 | Multiple bulged bases | ||
| IL_4V75_087 | No text annotation | ||
| IL_4V75_088 | Single stack bend | ||
| IL_4V75_089 | 7x7 Sarcin-Ricin with intercalated A; G-bulge | ||
| IL_4V75_090 | No text annotation | ||
| IL_4V75_091 | C-loop with bulged stacked A's | ||
| IL_4V75_092 | No text annotation | ||
| IL_4V75_093 | Double sheared with non-canonical cWW | ||
| IL_4V75_094 | Single bulged A | ||
| IL_4V75_095 | No text annotation | ||
| IL_4V75_096 | UAA/GAN | ||
| IL_4V75_097 | SSU/LSU pseudoknot | ||
| IL_4V75_098 | Single bulged U | ||
| IL_4V75_099 | Kink-turn related | ||
| IL_4V75_100 | No text annotation | ||
| IL_4V75_101 | Isolated non-canonical cWW pair | ||
| IL_4V75_102 | Tandem non-canonical cWW pairs | ||
| IL_4V75_103 | Kink-turn | ||
| IL_4V75_104 | No text annotation | ||
| IL_4V75_202 | No text annotation | ||
| IL_4V75_105 | No text annotation | ||
| IL_4V75_187 | No text annotation | ||
| IL_4V75_106 | Isolated cWS basepair | ||
| IL_4V75_107 | No text annotation | ||
| IL_4V75_108 | Kink-turn | ||
| IL_4V75_109 | 8x7 Sarcin-Ricin; G-bulge | ||
| IL_4V75_110 | Major groove platform; stack outside cWW | ||
| IL_4V75_111 | C-loop | ||
| IL_4V75_112 | UAA/GAN | ||
| IL_4V75_113 | tSH-tHW-tHS | ||
| IL_4V75_114 | No text annotation | ||
| IL_4V75_115 | UAA/GAN | ||
| IL_4V75_116 | Tandem non-canonical cWW pairs | ||
| IL_4V75_117 | No text annotation | ||
| IL_4V75_118 | No text annotation | ||
| IL_4V75_188 | No text annotation | ||
| IL_4V75_119 | No text annotation | ||
| IL_4V75_120 | No text annotation | ||
| IL_4V75_121 | Single bulged A | ||
| IL_4V75_122 | UAA/GAN variation | ||
| IL_4V75_123 | No text annotation | ||
| IL_4V75_124 | Isolated tWW turn | ||
| IL_4V75_125 | Major groove platform; stack outside cWW | ||
| IL_4V75_189 | No text annotation | ||
| IL_4V75_126 | Intercalated tWH | ||
| IL_4V75_127 | tSH-tSH-tHH-tHS | ||
| IL_4V75_128 | 6x5 Sarcin-Ricin; G-bulge | ||
| IL_4V75_129 | Triple sheared | ||
| IL_4V75_130 | Single bulged C | ||
| IL_4V75_131 | Single bulged A | ||
| IL_4V75_132 | Kink-turn related | ||
| IL_4V75_133 | Minor groove platform, major groove intercalation | ||
| IL_4V75_134 | Major groove intercalation | ||
| IL_4V75_135 | Major groove minor groove platform; mini C-loop | ||
| IL_4V75_190 | No text annotation | ||
| IL_4V75_136 | UAA/GAN related | ||
| IL_4V75_137 | Major groove intercalation | ||
| IL_4V75_138 | No text annotation | ||
| IL_4V75_139 | Major groove platform | ||
| IL_4V75_140 | No text annotation | ||
| IL_4V75_141 | Single bulged U | ||
| IL_4V75_142 | Minor groove platform | ||
| IL_4V75_143 | Isolated tHS basepair with bulges | ||
| IL_4V75_144 | No text annotation | ||
| IL_4V75_145 | Isolated cWS basepair | ||
| IL_4V75_203 | Isolated non-canonical cWW pair | ||
| IL_4V75_146 | Tandem non-canonical cWW pairs | ||
| IL_4V75_147 | No text annotation | ||
| IL_4V75_204 | No text annotation | ||
| IL_4V75_148 | Multiple bulged bases | ||
| IL_4V75_149 | Isolated cWH basepair | ||
| IL_4V75_150 | No text annotation | ||
| IL_4V75_151 | No text annotation | ||
| IL_4V75_191 | Isolated non-canonical cWW pair | ||
| IL_4V75_152 | Single bulged U | ||
| IL_4V75_153 | Double sheared | ||
| IL_4V75_154 | No text annotation | ||
| IL_4V75_155 | Major groove platform | ||
| IL_4V75_156 | Major groove platform | ||
| IL_4V75_157 | Major groove minor groove platform with extra cWW | ||
| IL_4V75_158 | Double sheared with non-canonical cWW | ||
| IL_4V75_159 | No text annotation | ||
| IL_4V75_160 | Isolated non-canonical cWW with bulges | ||
| IL_4V75_161 | Multiple bulged bases | ||
| IL_4V75_162 | Major groove platform with intercalation | ||
| IL_4V75_163 | Isolated near basepair | ||
| IL_4V75_164 | Single bulged A | ||
| IL_4V75_165 | tSH-tHS-tHW | ||
| IL_4V75_166 | Sarcin-Ricin target in LSU H95; G-bulge | ||
| IL_4V75_167 | C-loop | ||
| IL_4V75_168 | UAA/GAN related, with intercalation | ||
| IL_4V75_169 | Multiple bulged bases | ||
| IL_4V75_170 | UAA/GAN with extra cWW | ||
| IL_4V75_171 | No text annotation | ||
| IL_4V75_172 | Major groove intercalation | ||
| IL_4V75_173 | Multiple bulged bases with non-canonical cWW | ||
| IL_4V75_192 | No text annotation | ||
| IL_4V75_174 | No text annotation | ||
| IL_4V75_193 | Major groove intercalation | ||
| IL_4V75_175 | Isolated non-canonical cWW with bulges | ||
| IL_4V75_176 | No text annotation | ||
| IL_4V75_177 | Major groove minor groove platform; mini C-loop | ||
| IL_4V75_178 | Symmetric double minor groove platform | ||
| IL_4V75_179 | Bacterial 5S Loop E |
Valid loops
No loops found
Problematic loops
| # | loop id | Problem | Sequence |
|---|---|---|---|
| J3_4V75_001 | No text annotation | ||
| J3_4V75_027 | No text annotation | ||
| J3_4V75_002 | No text annotation | ||
| J3_4V75_028 | No text annotation | ||
| J3_4V75_003 | No text annotation | ||
| J3_4V75_004 | No text annotation | ||
| J3_4V75_029 | No text annotation | ||
| J3_4V75_005 | No text annotation | ||
| J3_4V75_006 | No text annotation | ||
| J3_4V75_007 | No text annotation | ||
| J3_4V75_030 | No text annotation | ||
| J3_4V75_008 | No text annotation | ||
| J3_4V75_009 | No text annotation | ||
| J3_4V75_010 | No text annotation | ||
| J3_4V75_011 | No text annotation | ||
| J3_4V75_031 | No text annotation | ||
| J3_4V75_012 | No text annotation | ||
| J3_4V75_013 | No text annotation | ||
| J3_4V75_032 | No text annotation | ||
| J3_4V75_033 | No text annotation | ||
| J3_4V75_014 | No text annotation | ||
| J3_4V75_034 | No text annotation | ||
| J3_4V75_015 | No text annotation | ||
| J3_4V75_016 | No text annotation | ||
| J3_4V75_017 | No text annotation | ||
| J3_4V75_018 | No text annotation | ||
| J3_4V75_019 | No text annotation | ||
| J3_4V75_020 | No text annotation | ||
| J3_4V75_035 | No text annotation | ||
| J3_4V75_021 | Kink-turn 3-way junction | ||
| J3_4V75_036 | No text annotation | ||
| J3_4V75_022 | No text annotation | ||
| J3_4V75_023 | No text annotation | ||
| J3_4V75_024 | No text annotation | ||
| J3_4V75_025 | No text annotation | ||
| J3_4V75_026 | No text annotation | ||
| J4_4V75_001 | tRNA junction | ||
| J4_4V75_002 | tRNA junction | ||
| J4_4V75_003 | No text annotation | ||
| J4_4V75_004 | No text annotation | ||
| J4_4V75_005 | No text annotation | ||
| J4_4V75_006 | No text annotation | ||
| J4_4V75_007 | No text annotation | ||
| J4_4V75_008 | No text annotation | ||
| J4_4V75_009 | No text annotation | ||
| J4_4V75_010 | No text annotation | ||
| J4_4V75_011 | No text annotation | ||
| J4_4V75_012 | No text annotation | ||
| J4_4V75_013 | No text annotation | ||
| J4_4V75_014 | No text annotation | ||
| J4_4V75_015 | No text annotation | ||
| J4_4V75_016 | No text annotation | ||
| J5_4V75_001 | No text annotation | ||
| J5_4V75_002 | No text annotation | ||
| J5_4V75_003 | No text annotation | ||
| J5_4V75_004 | No text annotation | ||
| J5_4V75_005 | No text annotation | ||
| J5_4V75_006 | No text annotation | ||
| J5_4V75_007 | No text annotation | ||
| J5_4V75_008 | No text annotation | ||
| J5_4V75_009 | No text annotation | ||
| J6_4V75_001 | No text annotation | ||
| J7_4V75_001 | No text annotation | ||
| J7_4V75_002 | No text annotation |
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