J4_4V76_008

3D structure

PDB id

4V76 (explore in PDB, NAKB, or RNA 3D Hub)

Description

E. coli 70S-fMetVal-tRNAVal-tRNAfMet complex in intermediate post-translocation state (post2a)

Experimental method

ELECTRON MICROSCOPY

Resolution

17 Å

Loop

Sequence

CAAG*CGAAG*CGAG*CGUUAAG

Length

20 nucleotides

Bulged bases

4V76|1|BA|A|654

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J4_4V76_008 not in the Motif Atlas

Homologous match to J4_5J7L_020

Geometric discrepancy: 0.3254

The information below is about J4_5J7L_020

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J4_60168.1

Basepair signature

cWW-F-F-F-F-F-cWW-F-F-F-cWW-F-tSS-F-cWW

Number of instances in this motif group

2

Unit IDs

4V76|1|BA|C|601
4V76|1|BA|A|602
4V76|1|BA|A|603
4V76|1|BA|G|604
*
4V76|1|BA|C|624
4V76|1|BA|G|625
4V76|1|BA|A|626
4V76|1|BA|A|627
4V76|1|BA|G|628
*
4V76|1|BA|C|635
4V76|1|BA|G|636
4V76|1|BA|A|637
4V76|1|BA|G|638
*
4V76|1|BA|C|650
4V76|1|BA|G|651
4V76|1|BA|U|652
4V76|1|BA|U|653
4V76|1|BA|A|654
4V76|1|BA|A|655
4V76|1|BA|G|656

Current chains

Chain BA

23S ribosomal RNA

Nearby chains

Chain B3

50S ribosomal protein L35

Chain BE

50S ribosomal protein L4

Chain BL

50S ribosomal protein L15