3D structure

PDB id
4V77 (explore in PDB, NAKB, or RNA 3D Hub)
Description
E. coli 70S-fMetVal-tRNAVal-tRNAfMet complex in intermediate post-translocation state (post2b)
Experimental method
ELECTRON MICROSCOPY
Resolution
17 Å

Loop

Sequence
CUG*CG*CCUAAGGUAG*CGAAUG
Length
21 nucleotides
Bulged bases
4V77|1|BA|U|1971
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
J4_4V77_014 not in the Motif Atlas
Homologous match to J4_5J7L_026
Geometric discrepancy: 0.2248
The information below is about J4_5J7L_026
Detailed Annotation
No text annotation
Broad Annotation
No text annotation
Motif group
J4_93343.1
Basepair signature
cWW-tSS-cSS-cWH-cWW-tWH-tHS-cWW-cWW-tWW-F-cSH-F-F
Number of instances in this motif group
4

Unit IDs

4V77|1|BA|C|1833
4V77|1|BA|U|1834
4V77|1|BA|G|1835
*
4V77|1|BA|C|1905
4V77|1|BA|G|1906
*
4V77|1|BA|C|1924
4V77|1|BA|C|1925
4V77|1|BA|U|1926
4V77|1|BA|A|1927
4V77|1|BA|A|1928
4V77|1|BA|G|1929
4V77|1|BA|G|1930
4V77|1|BA|U|1931
4V77|1|BA|A|1932
4V77|1|BA|G|1933
*
4V77|1|BA|C|1967
4V77|1|BA|G|1968
4V77|1|BA|A|1969
4V77|1|BA|A|1970
4V77|1|BA|U|1971
4V77|1|BA|G|1972

Current chains

Chain BA
23S ribosomal RNA

Nearby chains

Chain A1
Transfer RNA; tRNA
Chain AA
Small subunit ribosomal RNA; SSU rRNA
Chain BC
50S ribosomal protein L2

Coloring options:


Copyright 2025 BGSU RNA group. Page generated in 1.3837 s
Application loaded.