J4_4V78_002

3D structure

PDB id

4V78 (explore in PDB, NAKB, or RNA 3D Hub)

Description

E. coli 70S-fMetVal-tRNAVal-tRNAfMet complex in intermediate post-translocation state (post3a)

Experimental method

ELECTRON MICROSCOPY

Resolution

20 Å

Loop

Sequence

G(4SU)GG*CGU*AAGGUCG*CC

Length

16 nucleotides

Bulged bases

4V78|1|A3|4SU|8, 4V78|1|A3|U|48, 4V78|1|A3|C|49

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J4_4V78_002 not in the Motif Atlas

Homologous match to J4_1U0B_001

Geometric discrepancy: 0.3306

The information below is about J4_1U0B_001

Detailed Annotation

tRNA junction

Broad Annotation

No text annotation

Motif group

J4_40477.2

Basepair signature

cWW-F-cWW-F-cWW-F-F-F-F-cWW-F

Number of instances in this motif group

4

Unit IDs

4V78|1|A3|G|7
4V78|1|A3|4SU|8
4V78|1|A3|G|9
4V78|1|A3|G|10
*
4V78|1|A3|C|26
4V78|1|A3|G|27
4V78|1|A3|U|28
*
4V78|1|A3|A|44
4V78|1|A3|A|45
4V78|1|A3|G|46
4V78|1|A3|G|47
4V78|1|A3|U|48
4V78|1|A3|C|49
4V78|1|A3|G|50
*
4V78|1|A3|C|66
4V78|1|A3|C|67

Current chains

Chain A3

tRNA-fMet

Nearby chains