3D structure

PDB id
4V79 (explore in PDB, NAKB, or RNA 3D Hub)
Description
E. coli 70S-fMetVal-tRNAVal-tRNAfMet complex in intermediate post-translocation state (post3b)
Experimental method
ELECTRON MICROSCOPY
Resolution
15 Å

Loop

Sequence
CUG*CG*CCUAAGGUAG*CGAAUG
Length
21 nucleotides
Bulged bases
4V79|1|BA|U|1971
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
J4_4V79_013 not in the Motif Atlas
Homologous match to J4_5J7L_026
Geometric discrepancy: 0.311
The information below is about J4_5J7L_026
Detailed Annotation
No text annotation
Broad Annotation
No text annotation
Motif group
J4_93343.1
Basepair signature
cWW-tSS-cSS-cWH-cWW-tWH-tHS-cWW-cWW-tWW-F-cSH-F-F
Number of instances in this motif group
4

Unit IDs

4V79|1|BA|C|1833
4V79|1|BA|U|1834
4V79|1|BA|G|1835
*
4V79|1|BA|C|1905
4V79|1|BA|G|1906
*
4V79|1|BA|C|1924
4V79|1|BA|C|1925
4V79|1|BA|U|1926
4V79|1|BA|A|1927
4V79|1|BA|A|1928
4V79|1|BA|G|1929
4V79|1|BA|G|1930
4V79|1|BA|U|1931
4V79|1|BA|A|1932
4V79|1|BA|G|1933
*
4V79|1|BA|C|1967
4V79|1|BA|G|1968
4V79|1|BA|A|1969
4V79|1|BA|A|1970
4V79|1|BA|U|1971
4V79|1|BA|G|1972

Current chains

Chain BA
23S ribosomal RNA

Nearby chains

Chain A1
Transfer RNA; tRNA
Chain AA
Small subunit ribosomal RNA; SSU rRNA
Chain BC
50S ribosomal protein L2

Coloring options:


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