J4_4V7A_001
3D structure
- PDB id
- 4V7A (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- E. coli 70S-fMetVal-tRNAVal post-translocation complex (post4)
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 9 Å
Loop
- Sequence
- (4SU)UAG*CAC*GGG(7MG)UCG*CA
- Length
- 16 nucleotides
- Bulged bases
- 4V7A|1|A1|U|8, 4V7A|1|A1|U|47, 4V7A|1|A1|C|48
- QA status
- Modified nucleotides: 4SU, 7MG
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J4_4V7A_001 not in the Motif Atlas
- Homologous match to J4_7EQJ_002
- Geometric discrepancy: 0.2725
- The information below is about J4_7EQJ_002
- Detailed Annotation
- tRNA junction
- Broad Annotation
- No text annotation
- Motif group
- J4_70449.29
- Basepair signature
- cWW-F-cWW-cWW-cHS-F-cWW-cWW
- Number of instances in this motif group
- 54
Unit IDs
4V7A|1|A1|4SU|7
4V7A|1|A1|U|8
4V7A|1|A1|A|9
4V7A|1|A1|G|10
*
4V7A|1|A1|C|25
4V7A|1|A1|A|26
4V7A|1|A1|C|27
*
4V7A|1|A1|G|43
4V7A|1|A1|G|44
4V7A|1|A1|G|45
4V7A|1|A1|7MG|46
4V7A|1|A1|U|47
4V7A|1|A1|C|48
4V7A|1|A1|G|49
*
4V7A|1|A1|C|65
4V7A|1|A1|A|66
Current chains
- Chain A1
- fMet-Val-tRNA-Val
Nearby chains
- Chain AA
- Small subunit ribosomal RNA; SSU rRNA
- Chain AM
- 30S ribosomal protein S13
- Chain BA
- Large subunit ribosomal RNA; LSU rRNA
- Chain BM
- 50S ribosomal protein L16
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