4V7A Hairpin, Internal, and multi-helix Junction Loop Motifs
Valid loops
No loops found
Problematic loops
| # | loop id | Problem | Sequence |
|---|---|---|---|
| HL_4V7A_001 | No text annotation | ||
| HL_4V7A_002 | tRNA anticodon loop | ||
| HL_4V7A_003 | T-loop with 2 stacked bulged bases | ||
| HL_4V7A_004 | No text annotation | ||
| HL_4V7A_107 | No text annotation | ||
| HL_4V7A_005 | No text annotation | ||
| HL_4V7A_006 | GNRA | ||
| HL_4V7A_007 | No text annotation | ||
| HL_4V7A_008 | UNCG | ||
| HL_4V7A_009 | GNRA related | ||
| HL_4V7A_010 | GNRA | ||
| HL_4V7A_011 | No text annotation | ||
| HL_4V7A_012 | UNCG | ||
| HL_4V7A_013 | GNRA | ||
| HL_4V7A_014 | UNCG | ||
| HL_4V7A_015 | No text annotation | ||
| HL_4V7A_016 | GNRA | ||
| HL_4V7A_017 | No text annotation | ||
| HL_4V7A_018 | No text annotation | ||
| HL_4V7A_019 | GNRA | ||
| HL_4V7A_020 | No text annotation | ||
| HL_4V7A_021 | Externally structured | ||
| HL_4V7A_022 | GNRA | ||
| HL_4V7A_023 | GNRA | ||
| HL_4V7A_024 | No text annotation | ||
| HL_4V7A_025 | GNRA | ||
| HL_4V7A_026 | No text annotation | ||
| HL_4V7A_027 | GNRA | ||
| HL_4V7A_028 | T-loop related | ||
| HL_4V7A_029 | No text annotation | ||
| HL_4V7A_030 | GNRA | ||
| HL_4V7A_031 | GNRA | ||
| HL_4V7A_032 | T-loop with 3 stacked bulged bases | ||
| HL_4V7A_033 | No text annotation | ||
| HL_4V7A_034 | UNCG | ||
| HL_4V7A_035 | GNRA | ||
| HL_4V7A_036 | No text annotation | ||
| HL_4V7A_037 | No text annotation | ||
| HL_4V7A_038 | No text annotation | ||
| HL_4V7A_039 | No text annotation | ||
| HL_4V7A_040 | No text annotation | ||
| HL_4V7A_041 | No text annotation | ||
| HL_4V7A_042 | No text annotation | ||
| HL_4V7A_043 | No text annotation | ||
| HL_4V7A_044 | No text annotation | ||
| HL_4V7A_045 | No text annotation | ||
| HL_4V7A_046 | T-loop with unstacked turn | ||
| HL_4V7A_047 | No text annotation | ||
| HL_4V7A_110 | No text annotation | ||
| HL_4V7A_048 | No text annotation | ||
| HL_4V7A_049 | GNRA | ||
| HL_4V7A_050 | GNRA | ||
| HL_4V7A_051 | No text annotation | ||
| HL_4V7A_052 | T-loop with 2 stacked bulged bases | ||
| HL_4V7A_053 | No text annotation | ||
| HL_4V7A_054 | GNRA | ||
| HL_4V7A_055 | No text annotation | ||
| HL_4V7A_056 | GNRA wlth tandem sheared | ||
| HL_4V7A_057 | No text annotation | ||
| HL_4V7A_058 | UNCG variation | ||
| HL_4V7A_059 | No text annotation | ||
| HL_4V7A_060 | No text annotation | ||
| HL_4V7A_061 | No text annotation | ||
| HL_4V7A_062 | No text annotation | ||
| HL_4V7A_063 | No text annotation | ||
| HL_4V7A_064 | No text annotation | ||
| HL_4V7A_065 | No text annotation | ||
| HL_4V7A_066 | GNRA | ||
| HL_4V7A_067 | T-loop with 2 stacked bulged bases | ||
| HL_4V7A_068 | Pseudoknot geometry with 3' bulge | ||
| HL_4V7A_069 | GNRA | ||
| HL_4V7A_070 | No text annotation | ||
| HL_4V7A_071 | No text annotation | ||
| HL_4V7A_072 | Pseudoknot geometry with 3' bulge | ||
| HL_4V7A_073 | Externally structured | ||
| HL_4V7A_074 | Mini UNCG | ||
| HL_4V7A_075 | No text annotation | ||
| HL_4V7A_076 | GNRA | ||
| HL_4V7A_077 | UNCG | ||
| HL_4V7A_078 | No text annotation | ||
| HL_4V7A_079 | No text annotation | ||
| HL_4V7A_080 | No text annotation | ||
| HL_4V7A_081 | No text annotation | ||
| HL_4V7A_082 | GNRA | ||
| HL_4V7A_083 | No text annotation | ||
| HL_4V7A_084 | No text annotation | ||
| HL_4V7A_085 | No text annotation | ||
| HL_4V7A_086 | UNCG | ||
| HL_4V7A_087 | No text annotation | ||
| HL_4V7A_088 | No text annotation | ||
| HL_4V7A_089 | No text annotation | ||
| HL_4V7A_090 | No text annotation | ||
| HL_4V7A_091 | No text annotation | ||
| HL_4V7A_108 | Pseudoknot geometry | ||
| HL_4V7A_092 | GNRA | ||
| HL_4V7A_093 | GNRA | ||
| HL_4V7A_094 | No text annotation | ||
| HL_4V7A_095 | No text annotation | ||
| HL_4V7A_096 | No text annotation | ||
| HL_4V7A_097 | No text annotation | ||
| HL_4V7A_098 | GNRA | ||
| HL_4V7A_099 | GNRA related | ||
| HL_4V7A_100 | Ribsomal LSU H95 | ||
| HL_4V7A_101 | No text annotation | ||
| HL_4V7A_102 | No text annotation | ||
| HL_4V7A_103 | No text annotation | ||
| HL_4V7A_104 | GNRA | ||
| HL_4V7A_109 | No text annotation | ||
| HL_4V7A_105 | No text annotation | ||
| HL_4V7A_106 | No text annotation |
Valid loops
No loops found
Problematic loops
| # | loop id | Problem | Sequence |
|---|---|---|---|
| IL_4V7A_001 | Single bulged G | ||
| IL_4V7A_002 | Single bulged A | ||
| IL_4V7A_003 | No text annotation | ||
| IL_4V7A_004 | Minor groove platform | ||
| IL_4V7A_005 | Multiple bulged bases | ||
| IL_4V7A_006 | Minor groove platform with extra cWW | ||
| IL_4V7A_007 | Minor groove platform | ||
| IL_4V7A_008 | Major groove intercalation | ||
| IL_4V7A_009 | No text annotation | ||
| IL_4V7A_010 | Isolated non-canonical cWW pair | ||
| IL_4V7A_011 | No text annotation | ||
| IL_4V7A_012 | Isolated cWH basepair | ||
| IL_4V7A_013 | tWH-tWH-tHW-tHW | ||
| IL_4V7A_014 | Minor groove platform | ||
| IL_4V7A_015 | Kink-turn with non-sequential stacking | ||
| IL_4V7A_016 | No text annotation | ||
| IL_4V7A_200 | No text annotation | ||
| IL_4V7A_188 | No text annotation | ||
| IL_4V7A_017 | C-loop | ||
| IL_4V7A_018 | Single bulged U | ||
| IL_4V7A_019 | C-loop | ||
| IL_4V7A_020 | Single bulged G | ||
| IL_4V7A_021 | No text annotation | ||
| IL_4V7A_022 | No text annotation | ||
| IL_4V7A_023 | tSH-tHW-tWW | ||
| IL_4V7A_024 | No text annotation | ||
| IL_4V7A_025 | Minor groove platform | ||
| IL_4V7A_026 | Single bulged A | ||
| IL_4V7A_027 | SSU/LSU pseudoknot | ||
| IL_4V7A_028 | Kink-turn related | ||
| IL_4V7A_029 | No text annotation | ||
| IL_4V7A_030 | tSH-tHW-tHS | ||
| IL_4V7A_031 | No text annotation | ||
| IL_4V7A_189 | Major groove platform | ||
| IL_4V7A_032 | Major groove minor groove platform; mini C-loop | ||
| IL_4V7A_201 | No text annotation | ||
| IL_4V7A_033 | No text annotation | ||
| IL_4V7A_034 | Major groove platform; stack outside cWW | ||
| IL_4V7A_035 | Single stack bend | ||
| IL_4V7A_036 | Tandem non-canonical cWW pairs | ||
| IL_4V7A_037 | No text annotation | ||
| IL_4V7A_038 | Kink-turn | ||
| IL_4V7A_039 | Left turn | ||
| IL_4V7A_040 | tSH-tHW-tHS | ||
| IL_4V7A_041 | 8x6 Sarcin-Ricin with inserted Y; G-bulge | ||
| IL_4V7A_042 | Single bulged A | ||
| IL_4V7A_043 | Single bulged G | ||
| IL_4V7A_044 | Minor groove platform | ||
| IL_4V7A_045 | No text annotation | ||
| IL_4V7A_046 | Isolated non-canonical cWW pair | ||
| IL_4V7A_190 | Minor groove platform | ||
| IL_4V7A_047 | Single stack bend | ||
| IL_4V7A_048 | Single bulged U | ||
| IL_4V7A_049 | Tandem non-canonical cWW pairs | ||
| IL_4V7A_191 | No text annotation | ||
| IL_4V7A_050 | Minor groove platform | ||
| IL_4V7A_051 | Single bulged A | ||
| IL_4V7A_052 | No text annotation | ||
| IL_4V7A_053 | Minor groove platform | ||
| IL_4V7A_054 | No text annotation | ||
| IL_4V7A_055 | No text annotation | ||
| IL_4V7A_056 | Isolated non-canonical cWW pair | ||
| IL_4V7A_057 | 180 degree turn | ||
| IL_4V7A_058 | Double sheared with non-canonical cWW | ||
| IL_4V7A_059 | No text annotation | ||
| IL_4V7A_060 | Isolated non-canonical cWW pair | ||
| IL_4V7A_061 | No text annotation | ||
| IL_4V7A_062 | No text annotation | ||
| IL_4V7A_063 | Isolated non-canonical cWW pair | ||
| IL_4V7A_064 | Isolated non-canonical cWW pair | ||
| IL_4V7A_192 | Isolated non-canonical cWW pair | ||
| IL_4V7A_065 | Tandem non-canonical cWW pairs | ||
| IL_4V7A_066 | Double sheared | ||
| IL_4V7A_193 | No text annotation | ||
| IL_4V7A_067 | No text annotation | ||
| IL_4V7A_068 | Single bulged A | ||
| IL_4V7A_069 | No text annotation | ||
| IL_4V7A_194 | No text annotation | ||
| IL_4V7A_070 | Triple sheared with non-canonical cWW | ||
| IL_4V7A_071 | Single bulged A | ||
| IL_4V7A_072 | Minor groove platform | ||
| IL_4V7A_073 | No text annotation | ||
| IL_4V7A_074 | Single stack bend | ||
| IL_4V7A_075 | 8x7 Sarcin-Ricin; G-bulge | ||
| IL_4V7A_076 | 7x6 Sarcin-Ricin; G-bulge | ||
| IL_4V7A_077 | No text annotation | ||
| IL_4V7A_078 | No text annotation | ||
| IL_4V7A_202 | No text annotation | ||
| IL_4V7A_079 | No text annotation | ||
| IL_4V7A_080 | No text annotation | ||
| IL_4V7A_081 | No text annotation | ||
| IL_4V7A_082 | Double sheared | ||
| IL_4V7A_083 | Isolated non-canonical cWW pair | ||
| IL_4V7A_084 | AAA cross-strand stack | ||
| IL_4V7A_085 | No text annotation | ||
| IL_4V7A_086 | tHW-tHW cross-strand stack | ||
| IL_4V7A_087 | Single bulged A | ||
| IL_4V7A_088 | Single bulged G | ||
| IL_4V7A_089 | Triple sheared | ||
| IL_4V7A_090 | Major groove platform | ||
| IL_4V7A_091 | Multiple bulged bases | ||
| IL_4V7A_092 | No text annotation | ||
| IL_4V7A_093 | Single stack bend | ||
| IL_4V7A_094 | 7x7 Sarcin-Ricin with intercalated A; G-bulge | ||
| IL_4V7A_095 | Single bulged G | ||
| IL_4V7A_096 | C-loop | ||
| IL_4V7A_097 | Isolated non-canonical cWW pair | ||
| IL_4V7A_098 | Double sheared with non-canonical cWW | ||
| IL_4V7A_195 | No text annotation | ||
| IL_4V7A_099 | Isolated non-canonical cWW pair | ||
| IL_4V7A_100 | Single bulged C | ||
| IL_4V7A_101 | UAA/GAN | ||
| IL_4V7A_102 | SSU/LSU pseudoknot | ||
| IL_4V7A_103 | Single bulged U | ||
| IL_4V7A_104 | Kink-turn related | ||
| IL_4V7A_105 | No text annotation | ||
| IL_4V7A_106 | Isolated non-canonical cWW pair | ||
| IL_4V7A_107 | Tandem non-canonical cWW pairs | ||
| IL_4V7A_108 | Kink-turn | ||
| IL_4V7A_109 | No text annotation | ||
| IL_4V7A_110 | No text annotation | ||
| IL_4V7A_111 | Isolated cWS basepair | ||
| IL_4V7A_112 | No text annotation | ||
| IL_4V7A_113 | Kink-turn | ||
| IL_4V7A_114 | Isolated non-canonical cWW pair | ||
| IL_4V7A_115 | 8x7 Sarcin-Ricin; G-bulge | ||
| IL_4V7A_116 | Major groove platform; stack outside cWW | ||
| IL_4V7A_117 | Major groove minor groove platform with tHH | ||
| IL_4V7A_203 | Single stack bend with SAM intercalation | ||
| IL_4V7A_118 | UAA/GAN | ||
| IL_4V7A_204 | No text annotation | ||
| IL_4V7A_119 | tSH-tHW-tHS | ||
| IL_4V7A_120 | Isolated non-canonical cWW pair | ||
| IL_4V7A_121 | No text annotation | ||
| IL_4V7A_122 | No text annotation | ||
| IL_4V7A_123 | UAA/GAN | ||
| IL_4V7A_124 | Tandem non-canonical cWW pairs | ||
| IL_4V7A_125 | No text annotation | ||
| IL_4V7A_126 | No text annotation | ||
| IL_4V7A_127 | tSH-tHW-tHS | ||
| IL_4V7A_128 | No text annotation | ||
| IL_4V7A_129 | Isolated non-canonical cWW with bulges | ||
| IL_4V7A_130 | UAA/GAN variation | ||
| IL_4V7A_131 | No text annotation | ||
| IL_4V7A_132 | Isolated tWW turn | ||
| IL_4V7A_133 | Major groove platform; stack outside cWW | ||
| IL_4V7A_196 | No text annotation | ||
| IL_4V7A_134 | Intercalated tWH | ||
| IL_4V7A_135 | tSH-tSH-tHH-tHS | ||
| IL_4V7A_136 | 6x5 Sarcin-Ricin; G-bulge | ||
| IL_4V7A_197 | Triple sheared | ||
| IL_4V7A_137 | Triple sheared with non-canonical cWW | ||
| IL_4V7A_138 | Single bulged A | ||
| IL_4V7A_139 | No text annotation | ||
| IL_4V7A_140 | Minor groove platform, major groove intercalation | ||
| IL_4V7A_141 | Major groove intercalation | ||
| IL_4V7A_142 | No text annotation | ||
| IL_4V7A_205 | Major groove minor groove platform; mini C-loop | ||
| IL_4V7A_198 | No text annotation | ||
| IL_4V7A_143 | UAA/GAN related | ||
| IL_4V7A_144 | Major groove intercalation | ||
| IL_4V7A_145 | No text annotation | ||
| IL_4V7A_146 | Major groove platform | ||
| IL_4V7A_147 | No text annotation | ||
| IL_4V7A_148 | Single bulged U | ||
| IL_4V7A_149 | Minor groove platform | ||
| IL_4V7A_150 | Isolated tHS basepair with bulges | ||
| IL_4V7A_151 | No text annotation | ||
| IL_4V7A_152 | Isolated cWS basepair | ||
| IL_4V7A_153 | Stack and bulge | ||
| IL_4V7A_154 | Isolated non-canonical cWW pair | ||
| IL_4V7A_155 | No text annotation | ||
| IL_4V7A_156 | Isolated non-canonical cWW pair | ||
| IL_4V7A_157 | No text annotation | ||
| IL_4V7A_158 | No text annotation | ||
| IL_4V7A_159 | No text annotation | ||
| IL_4V7A_160 | Single bulged U | ||
| IL_4V7A_161 | Double sheared | ||
| IL_4V7A_162 | No text annotation | ||
| IL_4V7A_163 | Major groove platform | ||
| IL_4V7A_164 | Major groove platform | ||
| IL_4V7A_165 | Major groove minor groove platform with extra cWW | ||
| IL_4V7A_166 | Isolated non-canonical cWW pair | ||
| IL_4V7A_167 | Double sheared with non-canonical cWW | ||
| IL_4V7A_168 | Major groove platform | ||
| IL_4V7A_169 | Isolated non-canonical cWW with bulges | ||
| IL_4V7A_170 | No text annotation | ||
| IL_4V7A_171 | No text annotation | ||
| IL_4V7A_199 | Major groove platform with intercalation | ||
| IL_4V7A_172 | Single bulged A | ||
| IL_4V7A_173 | tSH-tHS-tHW | ||
| IL_4V7A_174 | Sarcin-Ricin target in LSU H95; G-bulge | ||
| IL_4V7A_175 | C-loop | ||
| IL_4V7A_176 | UAA/GAN related, with intercalation | ||
| IL_4V7A_177 | Multiple bulged bases | ||
| IL_4V7A_178 | UAA/GAN with extra cWW | ||
| IL_4V7A_179 | No text annotation | ||
| IL_4V7A_180 | Major groove intercalation | ||
| IL_4V7A_181 | No text annotation | ||
| IL_4V7A_182 | No text annotation | ||
| IL_4V7A_206 | Major groove intercalation | ||
| IL_4V7A_183 | Isolated non-canonical cWW with bulges | ||
| IL_4V7A_184 | No text annotation | ||
| IL_4V7A_185 | Major groove minor groove platform; mini C-loop | ||
| IL_4V7A_186 | No text annotation | ||
| IL_4V7A_187 | Bacterial 5S Loop E |
Valid loops
No loops found
Problematic loops
| # | loop id | Problem | Sequence |
|---|---|---|---|
| J3_4V7A_020 | No text annotation | ||
| J3_4V7A_021 | No text annotation | ||
| J3_4V7A_022 | No text annotation | ||
| J3_4V7A_023 | No text annotation | ||
| J3_4V7A_024 | No text annotation | ||
| J3_4V7A_001 | No text annotation | ||
| J3_4V7A_002 | No text annotation | ||
| J3_4V7A_003 | No text annotation | ||
| J3_4V7A_004 | No text annotation | ||
| J3_4V7A_025 | No text annotation | ||
| J3_4V7A_005 | No text annotation | ||
| J3_4V7A_006 | No text annotation | ||
| J3_4V7A_007 | No text annotation | ||
| J3_4V7A_026 | No text annotation | ||
| J3_4V7A_008 | No text annotation | ||
| J3_4V7A_027 | No text annotation | ||
| J3_4V7A_038 | No text annotation | ||
| J3_4V7A_009 | No text annotation | ||
| J3_4V7A_028 | No text annotation | ||
| J3_4V7A_029 | No text annotation | ||
| J3_4V7A_030 | No text annotation | ||
| J3_4V7A_031 | No text annotation | ||
| J3_4V7A_032 | No text annotation | ||
| J3_4V7A_010 | No text annotation | ||
| J3_4V7A_011 | No text annotation | ||
| J3_4V7A_012 | No text annotation | ||
| J3_4V7A_013 | No text annotation | ||
| J3_4V7A_014 | No text annotation | ||
| J3_4V7A_033 | No text annotation | ||
| J3_4V7A_034 | No text annotation | ||
| J3_4V7A_015 | Kink-turn 3-way junction | ||
| J3_4V7A_035 | No text annotation | ||
| J3_4V7A_016 | No text annotation | ||
| J3_4V7A_017 | No text annotation | ||
| J3_4V7A_018 | No text annotation | ||
| J3_4V7A_036 | No text annotation | ||
| J3_4V7A_037 | No text annotation | ||
| J3_4V7A_019 | No text annotation | ||
| J4_4V7A_001 | tRNA junction | ||
| J4_4V7A_002 | No text annotation | ||
| J4_4V7A_003 | No text annotation | ||
| J4_4V7A_004 | No text annotation | ||
| J4_4V7A_005 | No text annotation | ||
| J4_4V7A_006 | No text annotation | ||
| J4_4V7A_007 | No text annotation | ||
| J4_4V7A_008 | No text annotation | ||
| J4_4V7A_009 | No text annotation | ||
| J4_4V7A_010 | No text annotation | ||
| J4_4V7A_011 | No text annotation | ||
| J4_4V7A_012 | No text annotation | ||
| J4_4V7A_016 | No text annotation | ||
| J4_4V7A_013 | No text annotation | ||
| J4_4V7A_014 | No text annotation | ||
| J4_4V7A_015 | No text annotation | ||
| J5_4V7A_001 | No text annotation | ||
| J5_4V7A_002 | No text annotation | ||
| J5_4V7A_003 | No text annotation | ||
| J5_4V7A_004 | No text annotation | ||
| J5_4V7A_005 | No text annotation | ||
| J5_4V7A_006 | No text annotation | ||
| J5_4V7A_007 | No text annotation | ||
| J5_4V7A_008 | No text annotation | ||
| J5_4V7A_009 | No text annotation | ||
| J6_4V7A_001 | No text annotation | ||
| J6_4V7A_002 | No text annotation | ||
| J7_4V7A_001 | No text annotation | ||
| J7_4V7A_002 | No text annotation | ||
| J10_4V7A_001 | No text annotation |
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