Valid loops

No loops found

Problematic loops

#loop idProblemSequence
HL_4V7A_001No text annotation
HL_4V7A_002tRNA anticodon loop
HL_4V7A_003T-loop with 2 stacked bulged bases
HL_4V7A_004No text annotation
HL_4V7A_107No text annotation
HL_4V7A_005No text annotation
HL_4V7A_006GNRA
HL_4V7A_007No text annotation
HL_4V7A_008UNCG
HL_4V7A_009GNRA related
HL_4V7A_010GNRA
HL_4V7A_011No text annotation
HL_4V7A_012UNCG
HL_4V7A_013GNRA
HL_4V7A_014UNCG
HL_4V7A_015No text annotation
HL_4V7A_016GNRA
HL_4V7A_017No text annotation
HL_4V7A_018No text annotation
HL_4V7A_019GNRA
HL_4V7A_020No text annotation
HL_4V7A_021Externally structured
HL_4V7A_022GNRA
HL_4V7A_023GNRA
HL_4V7A_024No text annotation
HL_4V7A_025GNRA
HL_4V7A_026No text annotation
HL_4V7A_027GNRA
HL_4V7A_028T-loop related
HL_4V7A_029No text annotation
HL_4V7A_030GNRA
HL_4V7A_031GNRA
HL_4V7A_032T-loop with 3 stacked bulged bases
HL_4V7A_033No text annotation
HL_4V7A_034UNCG
HL_4V7A_035GNRA
HL_4V7A_036No text annotation
HL_4V7A_037No text annotation
HL_4V7A_038No text annotation
HL_4V7A_039No text annotation
HL_4V7A_040No text annotation
HL_4V7A_041No text annotation
HL_4V7A_042No text annotation
HL_4V7A_043No text annotation
HL_4V7A_044No text annotation
HL_4V7A_045No text annotation
HL_4V7A_046T-loop with unstacked turn
HL_4V7A_047No text annotation
HL_4V7A_110No text annotation
HL_4V7A_048No text annotation
HL_4V7A_049GNRA
HL_4V7A_050GNRA
HL_4V7A_051No text annotation
HL_4V7A_052T-loop with 2 stacked bulged bases
HL_4V7A_053No text annotation
HL_4V7A_054GNRA
HL_4V7A_055No text annotation
HL_4V7A_056GNRA wlth tandem sheared
HL_4V7A_057No text annotation
HL_4V7A_058UNCG variation
HL_4V7A_059No text annotation
HL_4V7A_060No text annotation
HL_4V7A_061No text annotation
HL_4V7A_062No text annotation
HL_4V7A_063No text annotation
HL_4V7A_064No text annotation
HL_4V7A_065No text annotation
HL_4V7A_066GNRA
HL_4V7A_067T-loop with 2 stacked bulged bases
HL_4V7A_068Pseudoknot geometry with 3' bulge
HL_4V7A_069GNRA
HL_4V7A_070No text annotation
HL_4V7A_071No text annotation
HL_4V7A_072Pseudoknot geometry with 3' bulge
HL_4V7A_073Externally structured
HL_4V7A_074Mini UNCG
HL_4V7A_075No text annotation
HL_4V7A_076GNRA
HL_4V7A_077UNCG
HL_4V7A_078No text annotation
HL_4V7A_079No text annotation
HL_4V7A_080No text annotation
HL_4V7A_081No text annotation
HL_4V7A_082GNRA
HL_4V7A_083No text annotation
HL_4V7A_084No text annotation
HL_4V7A_085No text annotation
HL_4V7A_086UNCG
HL_4V7A_087No text annotation
HL_4V7A_088No text annotation
HL_4V7A_089No text annotation
HL_4V7A_090No text annotation
HL_4V7A_091No text annotation
HL_4V7A_108Pseudoknot geometry
HL_4V7A_092GNRA
HL_4V7A_093GNRA
HL_4V7A_094No text annotation
HL_4V7A_095No text annotation
HL_4V7A_096No text annotation
HL_4V7A_097No text annotation
HL_4V7A_098GNRA
HL_4V7A_099GNRA related
HL_4V7A_100Ribsomal LSU H95
HL_4V7A_101No text annotation
HL_4V7A_102No text annotation
HL_4V7A_103No text annotation
HL_4V7A_104GNRA
HL_4V7A_109No text annotation
HL_4V7A_105No text annotation
HL_4V7A_106No text annotation

Valid loops

No loops found

Problematic loops

#loop idProblemSequence
IL_4V7A_001Single bulged G
IL_4V7A_002Single bulged A
IL_4V7A_003No text annotation
IL_4V7A_004Minor groove platform
IL_4V7A_005Multiple bulged bases
IL_4V7A_006Minor groove platform with extra cWW
IL_4V7A_007Minor groove platform
IL_4V7A_008Major groove intercalation
IL_4V7A_009No text annotation
IL_4V7A_010Isolated non-canonical cWW pair
IL_4V7A_011No text annotation
IL_4V7A_012Isolated cWH basepair
IL_4V7A_013tWH-tWH-tHW-tHW
IL_4V7A_014Minor groove platform
IL_4V7A_015Kink-turn with non-sequential stacking
IL_4V7A_016No text annotation
IL_4V7A_200No text annotation
IL_4V7A_188No text annotation
IL_4V7A_017C-loop
IL_4V7A_018Single bulged U
IL_4V7A_019C-loop
IL_4V7A_020Single bulged G
IL_4V7A_021No text annotation
IL_4V7A_022No text annotation
IL_4V7A_023tSH-tHW-tWW
IL_4V7A_024No text annotation
IL_4V7A_025Minor groove platform
IL_4V7A_026Single bulged A
IL_4V7A_027SSU/LSU pseudoknot
IL_4V7A_028Kink-turn related
IL_4V7A_029No text annotation
IL_4V7A_030tSH-tHW-tHS
IL_4V7A_031No text annotation
IL_4V7A_189Major groove platform
IL_4V7A_032Major groove minor groove platform; mini C-loop
IL_4V7A_201No text annotation
IL_4V7A_033No text annotation
IL_4V7A_034Major groove platform; stack outside cWW
IL_4V7A_035Single stack bend
IL_4V7A_036Tandem non-canonical cWW pairs
IL_4V7A_037No text annotation
IL_4V7A_038Kink-turn
IL_4V7A_039Left turn
IL_4V7A_040tSH-tHW-tHS
IL_4V7A_0418x6 Sarcin-Ricin with inserted Y; G-bulge
IL_4V7A_042Single bulged A
IL_4V7A_043Single bulged G
IL_4V7A_044Minor groove platform
IL_4V7A_045No text annotation
IL_4V7A_046Isolated non-canonical cWW pair
IL_4V7A_190Minor groove platform
IL_4V7A_047Single stack bend
IL_4V7A_048Single bulged U
IL_4V7A_049Tandem non-canonical cWW pairs
IL_4V7A_191No text annotation
IL_4V7A_050Minor groove platform
IL_4V7A_051Single bulged A
IL_4V7A_052No text annotation
IL_4V7A_053Minor groove platform
IL_4V7A_054No text annotation
IL_4V7A_055No text annotation
IL_4V7A_056Isolated non-canonical cWW pair
IL_4V7A_057180 degree turn
IL_4V7A_058Double sheared with non-canonical cWW
IL_4V7A_059No text annotation
IL_4V7A_060Isolated non-canonical cWW pair
IL_4V7A_061No text annotation
IL_4V7A_062No text annotation
IL_4V7A_063Isolated non-canonical cWW pair
IL_4V7A_064Isolated non-canonical cWW pair
IL_4V7A_192Isolated non-canonical cWW pair
IL_4V7A_065Tandem non-canonical cWW pairs
IL_4V7A_066Double sheared
IL_4V7A_193No text annotation
IL_4V7A_067No text annotation
IL_4V7A_068Single bulged A
IL_4V7A_069No text annotation
IL_4V7A_194No text annotation
IL_4V7A_070Triple sheared with non-canonical cWW
IL_4V7A_071Single bulged A
IL_4V7A_072Minor groove platform
IL_4V7A_073No text annotation
IL_4V7A_074Single stack bend
IL_4V7A_0758x7 Sarcin-Ricin; G-bulge
IL_4V7A_0767x6 Sarcin-Ricin; G-bulge
IL_4V7A_077No text annotation
IL_4V7A_078No text annotation
IL_4V7A_202No text annotation
IL_4V7A_079No text annotation
IL_4V7A_080No text annotation
IL_4V7A_081No text annotation
IL_4V7A_082Double sheared
IL_4V7A_083Isolated non-canonical cWW pair
IL_4V7A_084AAA cross-strand stack
IL_4V7A_085No text annotation
IL_4V7A_086tHW-tHW cross-strand stack
IL_4V7A_087Single bulged A
IL_4V7A_088Single bulged G
IL_4V7A_089Triple sheared
IL_4V7A_090Major groove platform
IL_4V7A_091Multiple bulged bases
IL_4V7A_092No text annotation
IL_4V7A_093Single stack bend
IL_4V7A_0947x7 Sarcin-Ricin with intercalated A; G-bulge
IL_4V7A_095Single bulged G
IL_4V7A_096C-loop
IL_4V7A_097Isolated non-canonical cWW pair
IL_4V7A_098Double sheared with non-canonical cWW
IL_4V7A_195No text annotation
IL_4V7A_099Isolated non-canonical cWW pair
IL_4V7A_100Single bulged C
IL_4V7A_101UAA/GAN
IL_4V7A_102SSU/LSU pseudoknot
IL_4V7A_103Single bulged U
IL_4V7A_104Kink-turn related
IL_4V7A_105No text annotation
IL_4V7A_106Isolated non-canonical cWW pair
IL_4V7A_107Tandem non-canonical cWW pairs
IL_4V7A_108Kink-turn
IL_4V7A_109No text annotation
IL_4V7A_110No text annotation
IL_4V7A_111Isolated cWS basepair
IL_4V7A_112No text annotation
IL_4V7A_113Kink-turn
IL_4V7A_114Isolated non-canonical cWW pair
IL_4V7A_1158x7 Sarcin-Ricin; G-bulge
IL_4V7A_116Major groove platform; stack outside cWW
IL_4V7A_117Major groove minor groove platform with tHH
IL_4V7A_203Single stack bend with SAM intercalation
IL_4V7A_118UAA/GAN
IL_4V7A_204No text annotation
IL_4V7A_119tSH-tHW-tHS
IL_4V7A_120Isolated non-canonical cWW pair
IL_4V7A_121No text annotation
IL_4V7A_122No text annotation
IL_4V7A_123UAA/GAN
IL_4V7A_124Tandem non-canonical cWW pairs
IL_4V7A_125No text annotation
IL_4V7A_126No text annotation
IL_4V7A_127tSH-tHW-tHS
IL_4V7A_128No text annotation
IL_4V7A_129Isolated non-canonical cWW with bulges
IL_4V7A_130UAA/GAN variation
IL_4V7A_131No text annotation
IL_4V7A_132Isolated tWW turn
IL_4V7A_133Major groove platform; stack outside cWW
IL_4V7A_196No text annotation
IL_4V7A_134Intercalated tWH
IL_4V7A_135tSH-tSH-tHH-tHS
IL_4V7A_1366x5 Sarcin-Ricin; G-bulge
IL_4V7A_197Triple sheared
IL_4V7A_137Triple sheared with non-canonical cWW
IL_4V7A_138Single bulged A
IL_4V7A_139No text annotation
IL_4V7A_140Minor groove platform, major groove intercalation
IL_4V7A_141Major groove intercalation
IL_4V7A_142No text annotation
IL_4V7A_205Major groove minor groove platform; mini C-loop
IL_4V7A_198No text annotation
IL_4V7A_143UAA/GAN related
IL_4V7A_144Major groove intercalation
IL_4V7A_145No text annotation
IL_4V7A_146Major groove platform
IL_4V7A_147No text annotation
IL_4V7A_148Single bulged U
IL_4V7A_149Minor groove platform
IL_4V7A_150Isolated tHS basepair with bulges
IL_4V7A_151No text annotation
IL_4V7A_152Isolated cWS basepair
IL_4V7A_153Stack and bulge
IL_4V7A_154Isolated non-canonical cWW pair
IL_4V7A_155No text annotation
IL_4V7A_156Isolated non-canonical cWW pair
IL_4V7A_157No text annotation
IL_4V7A_158No text annotation
IL_4V7A_159No text annotation
IL_4V7A_160Single bulged U
IL_4V7A_161Double sheared
IL_4V7A_162No text annotation
IL_4V7A_163Major groove platform
IL_4V7A_164Major groove platform
IL_4V7A_165Major groove minor groove platform with extra cWW
IL_4V7A_166Isolated non-canonical cWW pair
IL_4V7A_167Double sheared with non-canonical cWW
IL_4V7A_168Major groove platform
IL_4V7A_169Isolated non-canonical cWW with bulges
IL_4V7A_170No text annotation
IL_4V7A_171No text annotation
IL_4V7A_199Major groove platform with intercalation
IL_4V7A_172Single bulged A
IL_4V7A_173tSH-tHS-tHW
IL_4V7A_174Sarcin-Ricin target in LSU H95; G-bulge
IL_4V7A_175C-loop
IL_4V7A_176UAA/GAN related, with intercalation
IL_4V7A_177Multiple bulged bases
IL_4V7A_178UAA/GAN with extra cWW
IL_4V7A_179No text annotation
IL_4V7A_180Major groove intercalation
IL_4V7A_181No text annotation
IL_4V7A_182No text annotation
IL_4V7A_206Major groove intercalation
IL_4V7A_183Isolated non-canonical cWW with bulges
IL_4V7A_184No text annotation
IL_4V7A_185Major groove minor groove platform; mini C-loop
IL_4V7A_186No text annotation
IL_4V7A_187Bacterial 5S Loop E

Valid loops

No loops found

Problematic loops

#loop idProblemSequence
J3_4V7A_020No text annotation
J3_4V7A_021No text annotation
J3_4V7A_022No text annotation
J3_4V7A_023No text annotation
J3_4V7A_024No text annotation
J3_4V7A_001No text annotation
J3_4V7A_002No text annotation
J3_4V7A_003No text annotation
J3_4V7A_004No text annotation
J3_4V7A_025No text annotation
J3_4V7A_005No text annotation
J3_4V7A_006No text annotation
J3_4V7A_007No text annotation
J3_4V7A_026No text annotation
J3_4V7A_008No text annotation
J3_4V7A_027No text annotation
J3_4V7A_038No text annotation
J3_4V7A_009No text annotation
J3_4V7A_028No text annotation
J3_4V7A_029No text annotation
J3_4V7A_030No text annotation
J3_4V7A_031No text annotation
J3_4V7A_032No text annotation
J3_4V7A_010No text annotation
J3_4V7A_011No text annotation
J3_4V7A_012No text annotation
J3_4V7A_013No text annotation
J3_4V7A_014No text annotation
J3_4V7A_033No text annotation
J3_4V7A_034No text annotation
J3_4V7A_015Kink-turn 3-way junction
J3_4V7A_035No text annotation
J3_4V7A_016No text annotation
J3_4V7A_017No text annotation
J3_4V7A_018No text annotation
J3_4V7A_036No text annotation
J3_4V7A_037No text annotation
J3_4V7A_019No text annotation
J4_4V7A_001tRNA junction
J4_4V7A_002No text annotation
J4_4V7A_003No text annotation
J4_4V7A_004No text annotation
J4_4V7A_005No text annotation
J4_4V7A_006No text annotation
J4_4V7A_007No text annotation
J4_4V7A_008No text annotation
J4_4V7A_009No text annotation
J4_4V7A_010No text annotation
J4_4V7A_011No text annotation
J4_4V7A_012No text annotation
J4_4V7A_016No text annotation
J4_4V7A_013No text annotation
J4_4V7A_014No text annotation
J4_4V7A_015No text annotation
J5_4V7A_001No text annotation
J5_4V7A_002No text annotation
J5_4V7A_003No text annotation
J5_4V7A_004No text annotation
J5_4V7A_005No text annotation
J5_4V7A_006No text annotation
J5_4V7A_007No text annotation
J5_4V7A_008No text annotation
J5_4V7A_009No text annotation
J6_4V7A_001No text annotation
J6_4V7A_002No text annotation
J7_4V7A_001No text annotation
J7_4V7A_002No text annotation
J10_4V7A_001No text annotation

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