J4_4V7B_014

3D structure

PDB id

4V7B (explore in PDB, NAKB, or RNA 3D Hub)

Description

Visualization of two tRNAs trapped in transit during EF-G-mediated translocation

Experimental method

ELECTRON MICROSCOPY

Resolution

6.8 Å

Loop

Sequence

CUG*CG*CCUAAGGUAG*CGAAUG

Length

21 nucleotides

Bulged bases

4V7B|1|BA|U|1971

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J4_4V7B_014 not in the Motif Atlas

Homologous match to J4_9DFE_008

Geometric discrepancy: 0.1027

The information below is about J4_9DFE_008

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J4_93343.1

Basepair signature

cWW-tSS-cSS-cWH-cWW-tWH-tHS-cWW-cWW-tWW-F-cSH-F-F

Number of instances in this motif group

4

Unit IDs

4V7B|1|BA|C|1833
4V7B|1|BA|U|1834
4V7B|1|BA|G|1835
*
4V7B|1|BA|C|1905
4V7B|1|BA|G|1906
*
4V7B|1|BA|C|1924
4V7B|1|BA|C|1925
4V7B|1|BA|U|1926
4V7B|1|BA|A|1927
4V7B|1|BA|A|1928
4V7B|1|BA|G|1929
4V7B|1|BA|G|1930
4V7B|1|BA|U|1931
4V7B|1|BA|A|1932
4V7B|1|BA|G|1933
*
4V7B|1|BA|C|1967
4V7B|1|BA|G|1968
4V7B|1|BA|A|1969
4V7B|1|BA|A|1970
4V7B|1|BA|U|1971
4V7B|1|BA|G|1972

Current chains

Chain BA

23S ribosomal RNA

Nearby chains

Chain AA

Small subunit ribosomal RNA; SSU rRNA

Chain AV

Transfer RNA; tRNA

Chain BC

50S ribosomal protein L2