J4_4V7C_008

3D structure

PDB id

4V7C (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the Ribosome with Elongation Factor G Trapped in the Pre-Translocation State (pre-translocation 70S*tRNA structure)

Experimental method

ELECTRON MICROSCOPY

Resolution

7.6 Å

Loop

Sequence

CAAG*CGAAG*CGAG*CGUUAAG

Length

20 nucleotides

Bulged bases

4V7C|1|BA|A|654

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J4_4V7C_008 not in the Motif Atlas

Homologous match to J4_5J7L_020

Geometric discrepancy: 0.1579

The information below is about J4_5J7L_020

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J4_60168.1

Basepair signature

cWW-F-F-F-F-F-cWW-F-F-F-cWW-F-tSS-F-cWW

Number of instances in this motif group

2

Unit IDs

4V7C|1|BA|C|601
4V7C|1|BA|A|602
4V7C|1|BA|A|603
4V7C|1|BA|G|604
*
4V7C|1|BA|C|624
4V7C|1|BA|G|625
4V7C|1|BA|A|626
4V7C|1|BA|A|627
4V7C|1|BA|G|628
*
4V7C|1|BA|C|635
4V7C|1|BA|G|636
4V7C|1|BA|A|637
4V7C|1|BA|G|638
*
4V7C|1|BA|C|650
4V7C|1|BA|G|651
4V7C|1|BA|U|652
4V7C|1|BA|U|653
4V7C|1|BA|A|654
4V7C|1|BA|A|655
4V7C|1|BA|G|656

Current chains

Chain BA

23S ribosomal RNA

Nearby chains

Chain B6

50S ribosomal protein L35

Chain BF

50S ribosomal protein L4

Chain BN

50S ribosomal protein L15