J4_4V7C_020
3D structure
- PDB id
- 4V7C (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Structure of the Ribosome with Elongation Factor G Trapped in the Pre-Translocation State (pre-translocation 70S*tRNA structure)
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 7.6 Å
Loop
- Sequence
- AUAG*CAGG*CCGUGUCC*GU
- Length
- 18 nucleotides
- Bulged bases
- 4V7C|1|AV|U|8, 4V7C|1|AV|U|47, 4V7C|1|AV|C|48
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J4_4V7C_020 not in the Motif Atlas
- Homologous match to J4_5WWT_001
- Geometric discrepancy: 0.4104
- The information below is about J4_5WWT_001
- Detailed Annotation
- tRNA junction
- Broad Annotation
- No text annotation
- Motif group
- J4_65285.1
- Basepair signature
- cWW-F-F-F-F-F-cWW-cWW-F-cWW-F
- Number of instances in this motif group
- 2
Unit IDs
4V7C|1|AV|A|7
4V7C|1|AV|U|8
4V7C|1|AV|A|9
4V7C|1|AV|G|10
*
4V7C|1|AV|C|25
4V7C|1|AV|A|26
4V7C|1|AV|G|27
4V7C|1|AV|G|28
*
4V7C|1|AV|C|42
4V7C|1|AV|C|43
4V7C|1|AV|G|44
4V7C|1|AV|U|45
4V7C|1|AV|G|46
4V7C|1|AV|U|47
4V7C|1|AV|C|48
4V7C|1|AV|C|49
*
4V7C|1|AV|G|65
4V7C|1|AV|U|66
Current chains
- Chain AV
- tRNA
Nearby chains
- Chain AY
- viomycin
- Chain BA
- Large subunit ribosomal RNA; LSU rRNA
Coloring options: