J4_4V7C_025

3D structure

PDB id

4V7C (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the Ribosome with Elongation Factor G Trapped in the Pre-Translocation State (pre-translocation 70S*tRNA structure)

Experimental method

ELECTRON MICROSCOPY

Resolution

7.6 Å

Loop

Sequence

CUG*CG*CCUAAGGUAG*CGAAUG

Length

21 nucleotides

Bulged bases

4V7C|1|BA|C|1925, 4V7C|1|BA|U|1971

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J4_4V7C_025 not in the Motif Atlas

Homologous match to J4_5J7L_026

Geometric discrepancy: 0.4088

The information below is about J4_5J7L_026

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J4_93343.1

Basepair signature

cWW-tSS-cSS-cWH-cWW-tWH-tHS-cWW-cWW-tWW-F-cSH-F-F

Number of instances in this motif group

4

Unit IDs

4V7C|1|BA|C|1833
4V7C|1|BA|U|1834
4V7C|1|BA|G|1835
*
4V7C|1|BA|C|1905
4V7C|1|BA|G|1906
*
4V7C|1|BA|C|1924
4V7C|1|BA|C|1925
4V7C|1|BA|U|1926
4V7C|1|BA|A|1927
4V7C|1|BA|A|1928
4V7C|1|BA|G|1929
4V7C|1|BA|G|1930
4V7C|1|BA|U|1931
4V7C|1|BA|A|1932
4V7C|1|BA|G|1933
*
4V7C|1|BA|C|1967
4V7C|1|BA|G|1968
4V7C|1|BA|A|1969
4V7C|1|BA|A|1970
4V7C|1|BA|U|1971
4V7C|1|BA|G|1972

Current chains

Chain BA

23S ribosomal RNA

Nearby chains

Chain AA

Small subunit ribosomal RNA; SSU rRNA

Chain AW

Transfer RNA; tRNA

Chain BD

50S ribosomal protein L2