J4_4V7D_003

3D structure

PDB id

4V7D (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the Ribosome with Elongation Factor G Trapped in the Pre-Translocation State (pre-translocation 70S*tRNA*EF-G structure)

Experimental method

ELECTRON MICROSCOPY

Resolution

7.6 Å

Loop

Sequence

CAAG*CGAAG*CGAG*CGUUAAG

Length

20 nucleotides

Bulged bases

4V7D|1|AA|A|654

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J4_4V7D_003 not in the Motif Atlas

Homologous match to J4_5J7L_020

Geometric discrepancy: 0.1399

The information below is about J4_5J7L_020

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J4_60168.1

Basepair signature

cWW-F-F-F-F-F-cWW-F-F-F-cWW-F-tSS-F-cWW

Number of instances in this motif group

2

Unit IDs

4V7D|1|AA|C|601
4V7D|1|AA|A|602
4V7D|1|AA|A|603
4V7D|1|AA|G|604
*
4V7D|1|AA|C|624
4V7D|1|AA|G|625
4V7D|1|AA|A|626
4V7D|1|AA|A|627
4V7D|1|AA|G|628
*
4V7D|1|AA|C|635
4V7D|1|AA|G|636
4V7D|1|AA|A|637
4V7D|1|AA|G|638
*
4V7D|1|AA|C|650
4V7D|1|AA|G|651
4V7D|1|AA|U|652
4V7D|1|AA|U|653
4V7D|1|AA|A|654
4V7D|1|AA|A|655
4V7D|1|AA|G|656

Current chains

Chain AA

23S ribosomal RNA

Nearby chains

Chain A7

50S ribosomal protein L35

Chain AF

50S ribosomal protein L4

Chain AO

50S ribosomal protein L15