J4_4V7D_018

3D structure

PDB id

4V7D (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the Ribosome with Elongation Factor G Trapped in the Pre-Translocation State (pre-translocation 70S*tRNA*EF-G structure)

Experimental method

ELECTRON MICROSCOPY

Resolution

7.6 Å

Loop

Sequence

GGAAG*CGCG*CAG*CGUAC

Length

17 nucleotides

Bulged bases

None detected

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J4_4V7D_018 not in the Motif Atlas

Homologous match to J4_5J7L_019

Geometric discrepancy: 0.1236

The information below is about J4_5J7L_019

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J4_71729.5

Basepair signature

cWW-tSH-cHH-F-F-tHS-cWW-cWW-F-F-cWW

Number of instances in this motif group

4

Unit IDs

4V7D|1|AA|G|297
4V7D|1|AA|G|298
4V7D|1|AA|A|299
4V7D|1|AA|A|300
4V7D|1|AA|G|301
*
4V7D|1|AA|C|316
4V7D|1|AA|G|317
4V7D|1|AA|C|318
4V7D|1|AA|G|319
*
4V7D|1|AA|C|323
4V7D|1|AA|A|324
4V7D|1|AA|G|325
*
4V7D|1|AA|C|337
4V7D|1|AA|G|338
4V7D|1|AA|U|339
4V7D|1|AA|A|340
4V7D|1|AA|C|341

Current chains

Chain AA

23S ribosomal RNA

Nearby chains

Chain AF

50S ribosomal protein L4

Chain AX

50S ribosomal protein L24