J4_4V7D_020

3D structure

PDB id

4V7D (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the Ribosome with Elongation Factor G Trapped in the Pre-Translocation State (pre-translocation 70S*tRNA*EF-G structure)

Experimental method

ELECTRON MICROSCOPY

Resolution

7.6 Å

Loop

Sequence

GGUUC*GGUGAG*CU*AAUCGUAC

Length

21 nucleotides

Bulged bases

4V7D|1|AA|G|1341

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J4_4V7D_020 not in the Motif Atlas

Homologous match to J4_5J7L_022

Geometric discrepancy: 0.1149

The information below is about J4_5J7L_022

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J4_69051.6

Basepair signature

cWW-F-cWW-F-tHW-F-cWW-F-F-F-F-F-cWW-cWW

Number of instances in this motif group

7

Unit IDs

4V7D|1|AA|G|1310
4V7D|1|AA|G|1311
4V7D|1|AA|U|1312
4V7D|1|AA|U|1313
4V7D|1|AA|C|1314
*
4V7D|1|AA|G|1338
4V7D|1|AA|G|1339
4V7D|1|AA|U|1340
4V7D|1|AA|G|1341
4V7D|1|AA|A|1342
4V7D|1|AA|G|1343
*
4V7D|1|AA|C|1404
4V7D|1|AA|U|1405
*
4V7D|1|AA|A|1597
4V7D|1|AA|A|1598
4V7D|1|AA|U|1599
4V7D|1|AA|C|1600
4V7D|1|AA|G|1601
4V7D|1|AA|U|1602
4V7D|1|AA|A|1603
4V7D|1|AA|C|1604

Current chains

Chain AA

23S ribosomal RNA

Nearby chains

Chain A6

50S ribosomal protein L34

Chain AW

50S ribosomal protein L23