J4_4V7D_030
3D structure
- PDB id
- 4V7D (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Structure of the Ribosome with Elongation Factor G Trapped in the Pre-Translocation State (pre-translocation 70S*tRNA*EF-G structure)
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 7.6 Å
Loop
- Sequence
- AUAG*CAG*CGUGUCC*GU
- Length
- 16 nucleotides
- Bulged bases
- 4V7D|1|BV|U|8, 4V7D|1|BV|U|47, 4V7D|1|BV|C|48
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J4_4V7D_030 not in the Motif Atlas
- Homologous match to J4_3TUP_001
- Geometric discrepancy: 0.4062
- The information below is about J4_3TUP_001
- Detailed Annotation
- tRNA junction
- Broad Annotation
- No text annotation
- Motif group
- J4_70449.29
- Basepair signature
- cWW-F-cWW-cWW-cHS-F-cWW-cWW
- Number of instances in this motif group
- 54
Unit IDs
4V7D|1|BV|A|7
4V7D|1|BV|U|8
4V7D|1|BV|A|9
4V7D|1|BV|G|10
*
4V7D|1|BV|C|25
4V7D|1|BV|A|26
4V7D|1|BV|G|27
*
4V7D|1|BV|C|43
4V7D|1|BV|G|44
4V7D|1|BV|U|45
4V7D|1|BV|G|46
4V7D|1|BV|U|47
4V7D|1|BV|C|48
4V7D|1|BV|C|49
*
4V7D|1|BV|G|65
4V7D|1|BV|U|66
Current chains
- Chain BV
- tRNA
Nearby chains
- Chain AA
- Large subunit ribosomal RNA; LSU rRNA
- Chain AP
- 50S ribosomal protein L16
- Chain BY
- viomycin
- Chain BZ
- Elongation Factor G
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