J4_4V7E_003

3D structure

PDB id

4V7E (explore in PDB, NAKB, or RNA 3D Hub)

Description

Model of the small subunit RNA based on a 5.5 A cryo-EM map of Triticum aestivum translating 80S ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

5.5 Å

Loop

Sequence

CGAG*UGCGCAAGGAAGCUGACGA*UG*UGGAG

Length

30 nucleotides

Bulged bases

4V7E|1|Aa|G|709, 4V7E|1|Aa|C|718, 4V7E|1|Aa|U|719, 4V7E|1|Aa|A|721, 4V7E|1|Aa|G|787, 4V7E|1|Aa|G|788

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

4V7E|1|Aa|C|679
4V7E|1|Aa|G|680
4V7E|1|Aa|A|681
4V7E|1|Aa|G|682
*
4V7E|1|Aa|U|706
4V7E|1|Aa|G|707
4V7E|1|Aa|C|708
4V7E|1|Aa|G|709
4V7E|1|Aa|C|710
4V7E|1|Aa|A|711
4V7E|1|Aa|A|712
4V7E|1|Aa|G|713
4V7E|1|Aa|G|714
4V7E|1|Aa|A|715
4V7E|1|Aa|A|716
4V7E|1|Aa|G|717
4V7E|1|Aa|C|718
4V7E|1|Aa|U|719
4V7E|1|Aa|G|720
4V7E|1|Aa|A|721
4V7E|1|Aa|C|722
4V7E|1|Aa|G|723
4V7E|1|Aa|A|724
*
4V7E|1|Aa|U|752
4V7E|1|Aa|G|753
*
4V7E|1|Aa|U|786
4V7E|1|Aa|G|787
4V7E|1|Aa|G|788
4V7E|1|Aa|A|789
4V7E|1|Aa|G|790

Current chains

Chain Aa

60S ribosomal RNA

Nearby chains

Chain CC

60S ribosomal protein L4

Chain CL

60S ribosomal protein L13E

Chain CQ

60S ribosomal protein L18E

Chain Ca

60S ribosomal protein L15

Chain Cb

60S ribosomal protein L29E