J4_4V7E_004

3D structure

PDB id

4V7E (explore in PDB, NAKB, or RNA 3D Hub)

Description

Model of the small subunit RNA based on a 5.5 A cryo-EM map of Triticum aestivum translating 80S ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

5.5 Å

Loop

Sequence

CAAAUAU*AG*CAAU*AG

Length

15 nucleotides

Bulged bases

4V7E|1|Aa|A|1455, 4V7E|1|Aa|U|1458

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J4_4V7E_004 not in the Motif Atlas

Homologous match to J4_8P9A_014

Geometric discrepancy: 0.23

The information below is about J4_8P9A_014

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J4_34212.1

Basepair signature

cWW-F-cWW-F-F-F-cWW-F-cWW

Number of instances in this motif group

3

Unit IDs

4V7E|1|Aa|C|1454
4V7E|1|Aa|A|1455
4V7E|1|Aa|A|1456
4V7E|1|Aa|A|1457
4V7E|1|Aa|U|1458
4V7E|1|Aa|A|1459
4V7E|1|Aa|U|1460
*
4V7E|1|Aa|A|1478
4V7E|1|Aa|G|1479
*
4V7E|1|Aa|C|1873
4V7E|1|Aa|A|1874
4V7E|1|Aa|A|1875
4V7E|1|Aa|U|1876
*
4V7E|1|Aa|A|2351
4V7E|1|Aa|G|2352

Current chains

Chain Aa

60S ribosomal RNA

Nearby chains

Chain CP

60S ribosomal protein L22

Chain CR

60S ribosomal protein L19E

Chain Cd

60S ribosomal protein L31E