J4_4V7E_006

3D structure

PDB id

4V7E (explore in PDB, NAKB, or RNA 3D Hub)

Description

Model of the small subunit RNA based on a 5.5 A cryo-EM map of Triticum aestivum translating 80S ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

5.5 Å

Loop

Sequence

GG*CU*AG*UC

Length

8 nucleotides

Bulged bases

None detected

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J4_4V7E_006 not in the Motif Atlas

Homologous match to J4_8P9A_016

Geometric discrepancy: 0.1617

The information below is about J4_8P9A_016

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J4_75575.1

Basepair signature

cWW-cWW-cWW-cWW

Number of instances in this motif group

7

Unit IDs

4V7E|1|Aa|G|1671
4V7E|1|Aa|G|1672
*
4V7E|1|Aa|C|1690
4V7E|1|Aa|U|1691
*
4V7E|1|Aa|A|1750
4V7E|1|Aa|G|1751
*
4V7E|1|Aa|U|1768
4V7E|1|Aa|C|1769

Current chains

Chain Aa

60S ribosomal RNA

Nearby chains

Chain CR

60S ribosomal protein L19E

Chain CU

60S ribosomal protein L22E

Chain Cg

60S ribosomal protein L34E

Chain Ck

60S ribosomal protein L38E