J4_4V7E_007

3D structure

PDB id

4V7E (explore in PDB, NAKB, or RNA 3D Hub)

Description

Model of the small subunit RNA based on a 5.5 A cryo-EM map of Triticum aestivum translating 80S ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

5.5 Å

Loop

Sequence

GCAAAACGG*UG*UGGUACGGACAAGG*CAC

Length

28 nucleotides

Bulged bases

4V7E|1|Aa|U|2106, 4V7E|1|Aa|G|2110, 4V7E|1|Aa|G|2115

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

4V7E|1|Aa|G|1902
4V7E|1|Aa|C|1903
4V7E|1|Aa|A|1904
4V7E|1|Aa|A|1905
4V7E|1|Aa|A|1906
4V7E|1|Aa|A|1907
4V7E|1|Aa|C|1908
4V7E|1|Aa|G|1909
4V7E|1|Aa|G|1910
*
4V7E|1|Aa|U|1934
4V7E|1|Aa|G|1935
*
4V7E|1|Aa|U|2103
4V7E|1|Aa|G|2104
4V7E|1|Aa|G|2105
4V7E|1|Aa|U|2106
4V7E|1|Aa|A|2107
4V7E|1|Aa|C|2108
4V7E|1|Aa|G|2109
4V7E|1|Aa|G|2110
4V7E|1|Aa|A|2111
4V7E|1|Aa|C|2112
4V7E|1|Aa|A|2113
4V7E|1|Aa|A|2114
4V7E|1|Aa|G|2115
4V7E|1|Aa|G|2116
*
4V7E|1|Aa|C|2330
4V7E|1|Aa|A|2331
4V7E|1|Aa|C|2332

Current chains

Chain Aa

60S ribosomal RNA

Nearby chains

Chain Ad

Small subunit ribosomal RNA; SSU rRNA

Chain CB

60S ribosomal protein L3

Chain CR

60S ribosomal protein L19E

Chain CV

60S ribosomal protein L14

Chain CW

60S ribosomal protein L24E