J4_4V7E_009
3D structure
- PDB id
- 4V7E (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Model of the small subunit RNA based on a 5.5 A cryo-EM map of Triticum aestivum translating 80S ribosome
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 5.5 Å
Loop
- Sequence
- CUG*CG*CUUAAGGUAG*UGAAUG
- Length
- 21 nucleotides
- Bulged bases
- 4V7E|1|Aa|U|2309
- QA status
- Unknown status
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J4_4V7E_009 not in the Motif Atlas
- Homologous match to J4_8C3A_007
- Geometric discrepancy: 0.1701
- The information below is about J4_8C3A_007
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- Not in a motif group
- Basepair signature
- Not available
- Number of instances in this motif group
- 0
Unit IDs
4V7E|1|Aa|C|2187
4V7E|1|Aa|U|2188
4V7E|1|Aa|G|2189
*
4V7E|1|Aa|C|2243
4V7E|1|Aa|G|2244
*
4V7E|1|Aa|C|2262
4V7E|1|Aa|U|2263
4V7E|1|Aa|U|2264
4V7E|1|Aa|A|2265
4V7E|1|Aa|A|2266
4V7E|1|Aa|G|2267
4V7E|1|Aa|G|2268
4V7E|1|Aa|U|2269
4V7E|1|Aa|A|2270
4V7E|1|Aa|G|2271
*
4V7E|1|Aa|U|2305
4V7E|1|Aa|G|2306
4V7E|1|Aa|A|2307
4V7E|1|Aa|A|2308
4V7E|1|Aa|U|2309
4V7E|1|Aa|G|2310
Current chains
- Chain Aa
- 60S ribosomal RNA
Nearby chains
- Chain Ad
- Small subunit ribosomal RNA; SSU rRNA
- Chain Ae
- Transfer RNA; tRNA
- Chain CA
- 60S ribosomal protein L2
- Chain Cn
- 60S ribosomal protein L41E
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