J4_4V7E_012

3D structure

PDB id

4V7E (explore in PDB, NAKB, or RNA 3D Hub)

Description

Model of the small subunit RNA based on a 5.5 A cryo-EM map of Triticum aestivum translating 80S ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

5.5 Å

Loop

Sequence

CAUUAAAUC*GCC*GUGAC*GG

Length

19 nucleotides

Bulged bases

4V7E|1|Ad|G|363

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J4_4V7E_012 not in the Motif Atlas

Homologous match to J4_8C3A_021

Geometric discrepancy: 0.3551

The information below is about J4_8C3A_021

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J4_78231.1

Basepair signature

cWW-cSH-tHS-cWW-F-F-tHW-F-cWW-F-F-F-cWW

Number of instances in this motif group

2

Unit IDs

4V7E|1|Ad|C|100
4V7E|1|Ad|A|101
4V7E|1|Ad|U|102
4V7E|1|Ad|U|103
4V7E|1|Ad|A|104
4V7E|1|Ad|A|105
4V7E|1|Ad|A|106
4V7E|1|Ad|U|107
4V7E|1|Ad|C|108
*
4V7E|1|Ad|G|311
4V7E|1|Ad|C|312
4V7E|1|Ad|C|313
*
4V7E|1|Ad|G|361
4V7E|1|Ad|U|362
4V7E|1|Ad|G|363
4V7E|1|Ad|A|364
4V7E|1|Ad|C|365
*
4V7E|1|Ad|G|387
4V7E|1|Ad|G|388

Current chains

Chain Ad

18S ribosomal RNA

Nearby chains

Chain BL

40S ribosomal protein S17

Chain BX

40S ribosomal protein S12