3D structure

PDB id
4V7I (explore in PDB, NAKB, or RNA 3D Hub)
Description
Ribosome-SecY complex.
Experimental method
ELECTRON MICROSCOPY
Resolution
9.6 Å

Loop

Sequence
GGAAG*CGCG*CAG*CGUAC
Length
17 nucleotides
Bulged bases
None detected
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
J4_4V7I_002 not in the Motif Atlas
Homologous match to J4_9DFE_002
Geometric discrepancy: 0.2501
The information below is about J4_9DFE_002
Detailed Annotation
No text annotation
Broad Annotation
No text annotation
Motif group
J4_71729.5
Basepair signature
cWW-tSH-cHH-F-F-tHS-cWW-cWW-F-F-cWW
Number of instances in this motif group
4

Unit IDs

4V7I|1|A8|G|297
4V7I|1|A8|G|298
4V7I|1|A8|A|299
4V7I|1|A8|A|300
4V7I|1|A8|G|301
*
4V7I|1|A8|C|316
4V7I|1|A8|G|317
4V7I|1|A8|C|318
4V7I|1|A8|G|319
*
4V7I|1|A8|C|323
4V7I|1|A8|A|324
4V7I|1|A8|G|325
*
4V7I|1|A8|C|337
4V7I|1|A8|G|338
4V7I|1|A8|U|339
4V7I|1|A8|A|340
4V7I|1|A8|C|341

Current chains

Chain A8
23S ribosomal RNA

Nearby chains

Chain AE
50S ribosomal protein L4
Chain AU
50S ribosomal protein L24

Coloring options:


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